Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B15
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    29   0.73 
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.73 
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    29   0.96 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   1.7  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    28   1.7  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    27   5.1  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   6.8  

>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +3

Query: 105 HIIRM*TFYMLCSIKPTEPNRTQHP*RECTKHVCGSCYLKSCYATKHHRPRSKPYTLKDL 284
           H++R    ++LC  + T P ++QH  RE      G       +   +   RS P+ L + 
Sbjct: 89  HLVRTQDNFILCLHRITHPKQSQHK-REVVYCHHGLMTNSELWVAVNESERSLPFVLIES 147

Query: 285 GFPFQM---RASRYSR 323
           G+   +   R ++YSR
Sbjct: 148 GYDVWLGNNRGNKYSR 163


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 47  F*QTXTRKSASAVGYVAFLTYYSHVNILHAVFNQTYRTK*NTTSVTRMYKTCV 205
           F +  T +   AV     +   + V++ H V N+T++TK NT  + + +   V
Sbjct: 23  FVRNVTAEDEKAVTNKKHINSSATVHVFHGVVNRTFKTKGNTVGLPKSFSKAV 75


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -2

Query: 592 NYTPGVISEPSVFTGLPASSTKPSTVHSPLSCLYPKPSFMTKVQK*ILSPIFSAAFRS-L 416
           +++P   S P  +  +P  ST P+ V    S   P P+ +TK +   + PI +++ RS L
Sbjct: 112 SHSPHSFSNPR-YVAVPQKSTSPNQV---CSYCEPLPNHLTKTKSCSIPPILNSSDRSPL 167

Query: 415 NIHLPF 398
           ++  P+
Sbjct: 168 SLPTPY 173


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 587 YSWCYFRALCVYWITGFIYETFN 519
           +SWCY+ A  V W  GF  +  N
Sbjct: 801 HSWCYYVAALVLWSIGFALDEEN 823


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 37  SLKILTDXDPQIGQ-CGRVRRVPNILFACKHFT 132
           S K+L   +P +   C R  R P ++F   H+T
Sbjct: 172 SAKVLVPSEPNVSYICSRYYRAPELVFGATHYT 204


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 121 KHFTCCVQSNLPNQIEHNI 177
           K F  C   N PN+IEH I
Sbjct: 588 KSFPICTLKNFPNRIEHTI 606


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 176 SVTRMYKTCVWVLLFKIVLCYEAPPATLEAIHPKGLRVSVPDEGFSLF 319
           S+TR    C+ +L  K V+  +  P  +   HP   +V V D G S F
Sbjct: 804 SITRQLIQCLTLLNEKHVIHCDLKPENILLCHPFKSQVKVIDFGSSCF 851


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,210,180
Number of Sequences: 5004
Number of extensions: 64567
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)