Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B15
         (950 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0368 - 13127536-13128429                                         30   3.1  
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057...    29   4.1  
02_01_0302 - 2021221-2023305                                           29   7.2  
01_01_0099 - 751627-752126,752866-753056,753188-753945                 28   9.5  

>05_03_0368 - 13127536-13128429
          Length = 297

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 61  DPQIGQCGRVRRVPNILFACKHFTCCVQSNLPNQIEHNIR 180
           D   G C +  RV ++ F C++F C    ++ + +E  IR
Sbjct: 86  DETRGGCRKCGRVGHLTFQCRNFLCVKDLDMDDDVEAGIR 125


>02_05_0278 +
           27404914-27404947,27405088-27405228,27405747-27405772,
           27406036-27406071,27406296-27406976
          Length = 305

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -1

Query: 566 ALCVYWI---TGFIYETFNCPLPVILSVS*AVLYDKSPKVNLISDFQRSISISEYPSSVF 396
           AL ++W+   +G   E F     VIL  +  V YD+     L S F +     +YP+ + 
Sbjct: 32  ALGMHWVASKSGETLEPFVASGSVILMAAALVAYDEDFFGKLSSSFDK-----DYPTKIS 86

Query: 395 WLRDVXW 375
           WLR   W
Sbjct: 87  WLRHWSW 93


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 32/118 (27%), Positives = 37/118 (31%), Gaps = 1/118 (0%)
 Frame = +1

Query: 598 PXPX*TPXSPXXLYPNPXSXTALPP*TXHXEXLSPXXPXPXPQXXXTLVFVXPXGXFPFX 777
           P P     SP   YP+P S    PP +      +P  P P P    T     P G     
Sbjct: 413 PYPQPPSSSPTPSYPSPSSSYPAPPGSN-----TPSYPSP-PSSATTPSSHSPPGG---S 463

Query: 778 KNXXPFSPFPXX*TFGVPXXXXFXG-XTPXFPLPXXYPXTXXXXXPPTGKPXX*TPXP 948
            +  P  P P       P      G  TP +P P     T     PP G      P P
Sbjct: 464 SSTTPSYPSPNGGKPSTPSHPSPPGSTTPSYPSPPSSSTTPSYHSPPQGHTTPSHPSP 521


>01_01_0099 - 751627-752126,752866-753056,753188-753945
          Length = 482

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 198 VLYILVTDVVFYLVR*V*LNTACKMFTCE*YVRNATYP 85
           VL +LV D        + L   C  FTC  ++RNA+YP
Sbjct: 22  VLAVLVPDAGGRRHHQIQLQPECPTFTCGAHLRNASYP 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,944,872
Number of Sequences: 37544
Number of extensions: 460626
Number of successful extensions: 964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)