Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B15
         (950 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_40454| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_12656| Best HMM Match : CS (HMM E-Value=0.0018)                     29   5.5  
SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)                    29   7.3  
SB_57094| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 390 KPKNGRWIFRDRNAALKIGDKIYFWTFVI-KDGLGYRQDNGE 512
           K K  +W   D NA  K+GD+ + +  V+ K GLG R DNGE
Sbjct: 25  KFKPHKWRLCDMNA--KVGDQNWDYERVMGKHGLGVRNDNGE 64


>SB_40454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = -1

Query: 539 FIYETFNCPLPVILSVS*AVLYDKSPKVNLISDFQRSISISEYPSSVFWLRDVXWTNGRP 360
           +I + +N     I  +   ++ DKS  V +I DF RS  ++E  + + +++ +      P
Sbjct: 2   YIQDVYNVNREEISQLLPKLIQDKSATVEMIKDFCRSFKVAEEEALLHYVKTLLLPTANP 61

Query: 359 L 357
           L
Sbjct: 62  L 62


>SB_12656| Best HMM Match : CS (HMM E-Value=0.0018)
          Length = 277

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 22/84 (26%), Positives = 30/84 (35%)
 Frame = +1

Query: 625 PXXLYPNPXSXTALPP*TXHXEXLSPXXPXPXPQXXXTLVFVXPXGXFPFXKNXXPFSPF 804
           P  L+P+P   T++PP + +    SP  P P P              FP   +  P  P 
Sbjct: 103 PFPLHPSPLPATSIPP-SRYIHPPSPLHPSPLPATSIPPSRYIHL-PFPIHPSPFPLHPS 160

Query: 805 PXX*TFGVPXXXXFXGXTPXFPLP 876
           P   T  +P         P  P P
Sbjct: 161 PLPAT-SIPPSRYIHPPFPLHPSP 183


>SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 390 KPKNGRWIFRDRNAALKIGDKIYFWTFVIKDGLGYRQDNGEWTVEG 527
           KPKN +W++ +      IG        +I   + Y+ D+G W+  G
Sbjct: 140 KPKNQKWVWYEHENPHNIGYDARVLNGMIDIAVTYKMDSGIWSPYG 185


>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
          Length = 1243

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 489 GYRQDNGEWTVEGFVDEAGNPVN 557
           G RQDN E +     ++AG PVN
Sbjct: 190 GLRQDNNEMSTSPIAEQAGGPVN 212


>SB_57094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 771 FSQKSXXXFPLPPXVNLW 824
           F  K+   FPLPP  NLW
Sbjct: 42  FGSKAILNFPLPPMTNLW 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,754,982
Number of Sequences: 59808
Number of extensions: 531324
Number of successful extensions: 1107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2788625034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)