Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B15
         (950 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine rece...    32   0.69 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   6.5  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   6.5  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   6.5  
Z72509-1|CAA96645.1|  339|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 32 protein.
          Length = 339

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 591 IILLVLFQSPLCLLDYRLHLRNLQLSTPRYPVCIL 487
           ++ L+ F+SP CL  Y + L N  ++   Y +C L
Sbjct: 28  LLFLIFFKSPSCLTPYTVFLANTSITQLGYCICFL 62


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/92 (26%), Positives = 27/92 (29%)
 Frame = +1

Query: 640 PNPXSXTALPP*TXHXEXLSPXXPXPXPQXXXTLVFVXPXGXFPFXKNXXPFSPFPXX*T 819
           P P S T +PP       ++P  P P            P G  P         P P    
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSR 324

Query: 820 FGVPXXXXFXGXTPXFPLPXXYPXTXXXXXPP 915
           FG P      G  P  P    YP       PP
Sbjct: 325 FGPP---GMGGMPPPPPPGMRYPGGMPPPPPP 353


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/107 (22%), Positives = 32/107 (29%), Gaps = 3/107 (2%)
 Frame = +1

Query: 616 PXSPXXLYPNPXSXTALPP*TXHXEXLSPXXPXPXPQXXXTLVFVXPXGXFPFXKNXXPF 795
           P  P   YP        PP   + +   P    P        V V      P+ ++  P 
Sbjct: 50  PPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVP- 108

Query: 796 SPFPXX*TF---GVPXXXXFXGXTPXFPLPXXYPXTXXXXXPPTGKP 927
           +P P    +    VP    +    P  P P  YP       PP   P
Sbjct: 109 APAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPAP 155


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/92 (26%), Positives = 27/92 (29%)
 Frame = +1

Query: 640 PNPXSXTALPP*TXHXEXLSPXXPXPXPQXXXTLVFVXPXGXFPFXKNXXPFSPFPXX*T 819
           P P S T +PP       ++P  P P            P G  P         P P    
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSR 334

Query: 820 FGVPXXXXFXGXTPXFPLPXXYPXTXXXXXPP 915
           FG P      G  P  P    YP       PP
Sbjct: 335 FGPP---GMGGMPPPPPPGMRYPGGMPPPPPP 363


>Z72509-1|CAA96645.1|  339|Caenorhabditis elegans Hypothetical
           protein F32G8.1 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/35 (37%), Positives = 25/35 (71%)
 Frame = -3

Query: 591 IILLVLFQSPLCLLDYRLHLRNLQLSTPRYPVCIL 487
           ++LLV+F++P+   D+R+ L N   ST ++ +CI+
Sbjct: 33  VVLLVVFKTPVVFKDFRVFLVN--SSTLQFFMCII 65


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
            F48E3.8b protein.
          Length = 1299

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +3

Query: 138  CSIKPTEPNRTQHP*R---ECTKHVCGSCYLKSCYAT 239
            C + P E  R + P R   EC +   GSC L SC+ T
Sbjct: 946  CVVSPREQTRRRQPSRLLTECPRD--GSCRLPSCFCT 980


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,140,592
Number of Sequences: 27780
Number of extensions: 387362
Number of successful extensions: 870
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)