Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B15
(950 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 30 2.0
At5g52975.1 68418.m06577 expressed protein 29 3.4
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 29 4.5
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 29 6.0
At1g20410.1 68414.m02545 expressed protein 29 6.0
At5g38490.1 68418.m04652 hypothetical protein contains Pfam prof... 28 7.9
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 30.3 bits (65), Expect = 2.0
Identities = 32/119 (26%), Positives = 35/119 (29%)
Frame = +1
Query: 592 SXPXPX*TPXSPXXLYPNPXSXTALPP*TXHXEXLSPXXPXPXPQXXXTLVFVXPXGXFP 771
S P P P SP P P + PP +SP P P P P P
Sbjct: 125 SVPSPT-PPVSPPPPTPTPSVPSPTPP-------VSPPPPTPTPSVPSP---TPPVPTDP 173
Query: 772 FXKNXXPFSPFPXX*TFGVPXXXXFXGXTPXFPLPXXYPXTXXXXXPPTGKPXX*TPXP 948
P SP P T VP P +P T P P TP P
Sbjct: 174 MPSPPPPVSPPPPTPTPSVPSPPDVTPTPPTPSVPSPPDVTPTPPTPSVPSPPDVTPTP 232
Score = 29.9 bits (64), Expect = 2.6
Identities = 30/118 (25%), Positives = 36/118 (30%), Gaps = 1/118 (0%)
Frame = +1
Query: 598 PXPX*TPXSPXXLYPNPXSXTALPP*TXHXEXLSPXXPXPXPQXXXTLVFVXPXGXFPFX 777
P P +P P P+P + PP T SP P P T P
Sbjct: 77 PVPPVSPPPPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPV--- 133
Query: 778 KNXXPFSPFPXX*TFGVPXXXXFXGXTPXFPLP-XXYPXTXXXXXPPTGKPXX*TPXP 948
+ P +P P + P TP P P P PP P TP P
Sbjct: 134 -SPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDPMPSPPPPVSPPPPTPTP 190
>At5g52975.1 68418.m06577 expressed protein
Length = 121
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 176 SVTRMYKTCVWVLLFKIVLCYEAPPATLEAIHPKGLRVSVPDEGFSLFAFHGKLNEEMEG 355
SV + CV + + + V + PP T+ I P GL + + SLF G + E +
Sbjct: 8 SVILIVSLCVAIFVTQGVAHMQTPPTTVPGIFPPGLPIDLVKCWSSLFNVEGCVLEIAKS 67
Query: 356 LEAG 367
+ +G
Sbjct: 68 IFSG 71
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 29.1 bits (62), Expect = 4.5
Identities = 31/117 (26%), Positives = 34/117 (29%)
Frame = +1
Query: 592 SXPXPX*TPXSPXXLYPNPXSXTALPP*TXHXEXLSPXXPXPXPQXXXTLVFVXPXGXFP 771
S P P P P P P + P P P P P T V P P
Sbjct: 126 STPKP---PTKPPPSTPKPPTTKPPPSTPKPPHHKPPPTPCPPPTPTPTPPVVTPPTPTP 182
Query: 772 FXKNXXPFSPFPXX*TFGVPXXXXFXGXTPXFPLPXXYPXTXXXXXPPTGKPXX*TP 942
P +P P T P TP P+ T PPT P TP
Sbjct: 183 --PVITPPTPTPPVVTPPTPTPPVITPPTPTPPVITPPTPTPPVVTPPTPTPPVVTP 237
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Frame = +3
Query: 159 PNRTQHP*RECTKHV-CGSCYLKSCYATKHHRPRSK-----PYTLKDLGFPF---QMRAS 311
P R P EC+ ++ G C K + K+H P+++ PY L D G P Q +
Sbjct: 344 PERPDQP--ECSYYMKTGDCKFK--FNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICT 399
Query: 312 RYSRFTV 332
YSR+ +
Sbjct: 400 YYSRYGI 406
>At1g20410.1 68414.m02545 expressed protein
Length = 504
Score = 28.7 bits (61), Expect = 6.0
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 191 YKTCVWVLLFKIVLCYEAPPATLEAIHPKGLRVSVPDEGFSLFAFHGKLNEEMEGLEAGH 370
Y T VW+ KI + L+ + L+ S+ E S +FH +L EA
Sbjct: 168 YSTEVWLQRDKISV-----KDALKVLLLDQLKASLGAESDSS-SFHIRLTYTKASDEAQG 221
Query: 371 WSXXHHEAKKRKMDIQR-SKCCAEN 442
S HE+K+RK D + S C +EN
Sbjct: 222 ASETTHESKRRKTDAENGSNCISEN 246
>At5g38490.1 68418.m04652 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 364
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 408 WIFRD--RNAALKIGDKIYFWTFVIKDGLGYRQD 503
W + D ++++LK+GDKI WTF + L + D
Sbjct: 329 WGWNDVVKSSSLKVGDKISLWTFRCRGVLCFALD 362
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,259,533
Number of Sequences: 28952
Number of extensions: 366583
Number of successful extensions: 900
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2285480280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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