Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B14
         (934 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             207   1e-53
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.76 
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   30   2.3  
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)        30   3.1  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               29   4.1  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         29   5.4  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   7.1  
SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           29   7.1  
SB_30938| Best HMM Match : DAGK_acc (HMM E-Value=1.4013e-45)           28   9.4  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  207 bits (505), Expect = 1e-53
 Identities = 100/145 (68%), Positives = 123/145 (84%)
 Frame = +3

Query: 96  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 275
           MK N +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60

Query: 276 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 455
           H+K QQVGKV+QVYRKK+V++I+RIQREKANGAT  VGIHPSK  IVKLK++KDRK ILD
Sbjct: 61  HFKSQQVGKVIQVYRKKWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILD 120

Query: 456 RRAKGRLAALGKDXGKYTEETXPAL 530
           R+ + +LA    + GK+TEE   A+
Sbjct: 121 RKNRSKLA----EKGKHTEEEVQAM 141


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.76
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 96  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 248
           MK + Q+    RK+ K H   P HIR+    S + K +R+  N  + P  IRK
Sbjct: 1   MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 682 PPXPXXPPFGGXXXXPPXXXXPXXXXXXXPPXPXXP 789
           PP P  PP GG    PP            PP P  P
Sbjct: 363 PPPPPPPPVGGPPPPPPPIEGRPPSSLGNPPPPPPP 398


>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
          Length = 1017

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 2/143 (1%)
 Frame = +3

Query: 6   FNTDSPIGNSLRF-AFSISVLSRVVLAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVL 182
           + T SP+   +   A  IS +S +    S ++   K VTS +  N K   S+     + +
Sbjct: 507 YQTSSPLPPDINHQARYISKISNIKSVTSGKITNIKSVTSGKISNIKSVTSSKISNIQSV 566

Query: 183 MSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRK-KFVVYIERIQRE 359
            S  +SK      NVKS+   K   ++      K Q    + ++  K        R+Q  
Sbjct: 567 TSGKISKMKSVTSNVKSVTSGKISNIKSALPRVKYQSPSPLHRLDGKHPRSPRRIRVQTG 626

Query: 360 KANGATAYVGIHPSKCVIVKLKM 428
            ++GA+A++ + P++    + K+
Sbjct: 627 VSSGASAHLNVKPTEYAYGRTKI 649


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 682 PPXPXXPPFGGXXXXPPXXXXPXXXXXXXPPXPXXP 789
           P  P  PP GG    PP    P       PP P  P
Sbjct: 302 PAPPPPPPPGGAPPPPPPPPPPPPGDGGAPPPPPPP 337


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +1

Query: 640 PXXXXXPLXXXVXXPPXPXXPPFGGXXXXPPXXXXPXXXXXXXPPXPXXP 789
           P     PL       P P  PP  G    PP    P       PP P  P
Sbjct: 697 PPPPPPPLLSGTLPMPPPPPPPPPGCAGLPPPPPSPQPGCAGLPPPPPPP 746


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 368 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQR 493
           W N IC     ++C C+V DE     N + ++    G TW R
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTR 564


>SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 80  GEERQNEVQQAGDFLKK--EKQEEAFQCSFTYKASVDVLSPV*GTKTKIQ 223
           G E++    +A ++ KK  E  +  F C   Y  +V  +    GTKTKIQ
Sbjct: 163 GNEKKKFTYEALEYAKKSVELDDRDFACHKWYAITVSNVGDFEGTKTKIQ 212


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 459 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP--FLFESSQCIQQTFYD 316
           C  G +  +   ST  +  L+G+ CR M+L HWP  F  +  + + +T  D
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDETSKD 375


>SB_30938| Best HMM Match : DAGK_acc (HMM E-Value=1.4013e-45)
          Length = 709

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 9   NTDSPIGNSLRFAFSISVLSRVVLAKSDRMKFNKQVTSSRRKNRKRHF 152
           N DSP  N +   FSI V + V L    + + N +  +SR KN+ R+F
Sbjct: 455 NGDSPPLNIINNYFSIGVDASVALKFHLQREKNPEKFNSRLKNKFRYF 502


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 71   CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTY 169
            C F EER    QQ G   K E+ ++AF  +  Y
Sbjct: 2583 CPFTEERMESFQQIGRTAKSEESDKAFGFNTIY 2615


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,087,755
Number of Sequences: 59808
Number of extensions: 392278
Number of successful extensions: 1203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2717121828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)