Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B14
         (934 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   193   2e-49
At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           188   5e-48
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    31   1.4  
At1g61080.1 68414.m06877 proline-rich family protein                   28   7.7  
At1g28070.1 68414.m03436 expressed protein ; expression supporte...    28   7.7  

>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  193 bits (470), Expect = 2e-49
 Identities = 93/140 (66%), Positives = 117/140 (83%)
 Frame = +3

Query: 96  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 275
           MK+N +VTSSRRKNRK HF+A S  RRV+MSSPLS +LRQK+NV+SMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 276 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 455
            YKG++ GKV+QVYR+K+V++IERI REK NG T  VGI PSK VI KL+++KDRK++L+
Sbjct: 61  TYKGRE-GKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLE 119

Query: 456 RRAKGRLAALGKDXGKYTEE 515
           R+AKGR AA  +   K+T E
Sbjct: 120 RKAKGRAAADKEKGTKFTSE 139


>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  188 bits (458), Expect = 5e-48
 Identities = 90/140 (64%), Positives = 117/140 (83%)
 Frame = +3

Query: 96  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 275
           MKFN +V+SSRRKNRK HF+APS +RRVLMSSPLSK+LR K NV+SMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 276 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 455
            +KG++ GKVMQVYR+K+V++IERI REK NG+T  VG++ S  +I KL+++KDRK++L+
Sbjct: 61  TFKGRE-GKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLE 119

Query: 456 RRAKGRLAALGKDXGKYTEE 515
           R+A GR AA  +   K++ E
Sbjct: 120 RKANGRAAADKEKGTKFSAE 139


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/64 (25%), Positives = 17/64 (26%)
 Frame = +3

Query: 642 PXPXXPPXXXGXXXXXPXXPPFWGGXGXPPXXXXXXXXXXXXPPPXXXPXXXXXFXPXXX 821
           P P  PP         P  PP +     PP            PPP   P       P   
Sbjct: 427 PPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPS 486

Query: 822 PXXP 833
           P  P
Sbjct: 487 PPPP 490



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/64 (25%), Positives = 17/64 (26%)
 Frame = +3

Query: 642 PXPXXPPXXXGXXXXXPXXPPFWGGXGXPPXXXXXXXXXXXXPPPXXXPXXXXXFXPXXX 821
           P P  PP         P  PP       PP            PPP   P     + P   
Sbjct: 441 PPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPP 500

Query: 822 PXXP 833
           P  P
Sbjct: 501 PPPP 504


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/50 (30%), Positives = 16/50 (32%)
 Frame = +1

Query: 640 PXXXXXPLXXXVXXPPXPXXPPFGGXXXXPPXXXXPXXXXXXXPPXPXXP 789
           P     PL   +  PP P  PP       PP    P       PP P  P
Sbjct: 509 PPPPPPPLPTTIAAPPPPPPPPRAA--VAPPPPPPPPGTAAAPPPPPPPP 556


>At1g28070.1 68414.m03436 expressed protein ; expression supported
           by MPSS
          Length = 176

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 120 SSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVG 299
           S R      HFS PSH+ + L     + E+  +     M +++D    + RG+Y  Q  G
Sbjct: 38  SDRFLELSSHFSVPSHLEQCL--DLKTGEIYYRSWNSGMRVKEDPRKSMSRGNYADQSSG 95

Query: 300 K 302
           +
Sbjct: 96  E 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,101
Number of Sequences: 28952
Number of extensions: 289450
Number of successful extensions: 841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)