Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B12
         (1082 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    31   0.28 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   2.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.6  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 772 GKXXGGXXGNXGGGFXGXPXGGFXRGXKRG 683
           G   GG  GN  GGF G   GGF  G + G
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177



 Score = 29.5 bits (63), Expect = 0.85
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = -2

Query: 772 GKXXGGXXGNXGGGFXGXPXGGFXRGXKRG 683
           G   GG  G  GGG  G   GGF RG  RG
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGGF-RGGSRG 188



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = -2

Query: 757 GXXGNXGGGFXGXPXGGFXRGXKRGXISXGXXXXGXXXXTLFGXXGGXR 611
           G  G   GGF G   GGF  G + G    G    G       G  GG R
Sbjct: 145 GGRGGSRGGFGGNSRGGFGGGSRGGF--GGGSRGGSRGGFRGGSRGGFR 191


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 187 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 303
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 21/55 (38%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
 Frame = -2

Query: 775 EGKXXGGXXGNXGG--GFXGXPXGGFXRGXKRGXISXGXXXXGXXXXTLFGXXGG 617
           EG   GG  G  GG  GF G P GGF  G   G    G    G       G  GG
Sbjct: 216 EGHHHGGHGGFGGGPGGFEGGP-GGFGGGP--GGFGGGLGGFGGGPGGFGGGPGG 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,491
Number of Sequences: 5004
Number of extensions: 57539
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 569764052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)