Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B12
         (1082 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)                   30   3.7  
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)               29   6.5  

>SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)
          Length = 338

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 160 VQVWR*KPAHTRRGRRQTKSVSSWRSGYL*KQVNKQLKILRE 35
           V+V R +P H R     + S++ WRS Y  +   + L+  R+
Sbjct: 163 VEVRRAEPGHHRSQASPSLSIAGWRSAYFVRSTRRSLRPARQ 204


>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 20/55 (36%), Positives = 23/55 (41%)
 Frame = -1

Query: 740 GGGVXRVXXGGVXKGXQTGGXIXRXXXXGXXNXNPFRXXGRXQGTGXSSXGAGHD 576
           GGG+ R   GG  +G   GG   R    G          GR +GTG  S G G D
Sbjct: 144 GGGIGR--GGGRGRGGGEGGWGGRGGNGGGRGGGE-GGGGRGRGTGGGSRGGGGD 195


>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
          Length = 267

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 760 GGXXGNXGGGFXGXPXGGFXRGXKRG 683
           GG  G  GGGF G   GGF  G   G
Sbjct: 91  GGFGGGGGGGFGGGGGGGFGGGGGGG 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,995,674
Number of Sequences: 59808
Number of extensions: 456702
Number of successful extensions: 1386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3284497861
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)