Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B12
(1082 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003413-1|AAH03413.1| 217|Homo sapiens nucleolar protein famil... 34 0.78
AJ276003-1|CAB76563.1| 217|Homo sapiens GAR1 protein protein. 34 0.78
X56597-1|CAA39935.1| 321|Homo sapiens fibrillarin protein. 32 4.2
M59849-1|AAA52453.1| 321|Homo sapiens fibrillarin protein. 32 4.2
CR457069-1|CAG33350.1| 321|Homo sapiens FBL protein. 32 4.2
BT020144-1|AAV38946.1| 321|Homo sapiens fibrillarin protein. 32 4.2
BT006830-1|AAP35476.1| 321|Homo sapiens fibrillarin protein. 32 4.2
BC019260-1|AAH19260.1| 321|Homo sapiens fibrillarin protein. 32 4.2
AC006950-1|AAD15623.1| 227|Homo sapiens FBRL_HUMAN [AA 1- 227] ... 32 4.2
AC005393-3|AAC28913.1| 318|Homo sapiens FBRL_HUMAN protein. 32 4.2
X52426-1|CAA36673.1| 420|Homo sapiens cytokeratin 13 protein. 31 5.5
X14640-1|CAA32786.1| 458|Homo sapiens keratin 13 protein. 31 5.5
BC126184-1|AAI26185.1| 458|Homo sapiens keratin 13 protein. 31 5.5
BC077718-1|AAH77718.2| 458|Homo sapiens keratin 13 protein. 31 5.5
BC002661-1|AAH02661.3| 458|Homo sapiens keratin 13 protein. 31 5.5
AK223077-1|BAD96797.1| 458|Homo sapiens keratin 13 isoform a va... 31 5.5
AK223051-1|BAD96771.1| 458|Homo sapiens keratin 13 isoform a va... 31 5.5
AF049259-1|AAC35754.1| 420|Homo sapiens keratin 13 protein. 31 5.5
>BC003413-1|AAH03413.1| 217|Homo sapiens nucleolar protein family
A, member 1 (H/ACA small nucleolar RNPs) protein.
Length = 217
Score = 34.3 bits (75), Expect = 0.78
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 760 GGXXGNXGGGFXGXPXGGFXRGXKRGXISXG 668
GG G GG F G GGF RG RG + G
Sbjct: 31 GGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
>AJ276003-1|CAB76563.1| 217|Homo sapiens GAR1 protein protein.
Length = 217
Score = 34.3 bits (75), Expect = 0.78
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 760 GGXXGNXGGGFXGXPXGGFXRGXKRGXISXG 668
GG G GG F G GGF RG RG + G
Sbjct: 31 GGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
>X56597-1|CAA39935.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 31.9 bits (69), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 772 GKXXGGXXGNXGGGFXGXPXGGFXRGXKRG 683
G+ GG G GGG G GGF G RG
Sbjct: 42 GRGRGGGGGGGGGGGGGRGGGGFHSGGNRG 71
>M59849-1|AAA52453.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 31.9 bits (69), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 772 GKXXGGXXGNXGGGFXGXPXGGFXRGXKRG 683
G+ GG G GGG G GGF G RG
Sbjct: 42 GRGRGGGGGGGGGGGGGRGGGGFHSGGNRG 71
>CR457069-1|CAG33350.1| 321|Homo sapiens FBL protein.
Length = 321
Score = 31.9 bits (69), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 772 GKXXGGXXGNXGGGFXGXPXGGFXRGXKRG 683
G+ GG G GGG G GGF G RG
Sbjct: 42 GRGRGGGGGGGGGGGGGRGGGGFHSGGNRG 71
>BT020144-1|AAV38946.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 31.9 bits (69), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 772 GKXXGGXXGNXGGGFXGXPXGGFXRGXKRG 683
G+ GG G GGG G GGF G RG
Sbjct: 42 GRGRGGGGGGGGGGGGGRGGGGFHSGGNRG 71
>BT006830-1|AAP35476.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 31.9 bits (69), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 772 GKXXGGXXGNXGGGFXGXPXGGFXRGXKRG 683
G+ GG G GGG G GGF G RG
Sbjct: 42 GRGRGGGGGGGGGGGGGRGGGGFHSGGNRG 71
>BC019260-1|AAH19260.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 31.9 bits (69), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 772 GKXXGGXXGNXGGGFXGXPXGGFXRGXKRG 683
G+ GG G GGG G GGF G RG
Sbjct: 42 GRGRGGGGGGGGGGGGGRGGGGFHSGGNRG 71
>AC006950-1|AAD15623.1| 227|Homo sapiens FBRL_HUMAN [AA 1- 227]
protein.
Length = 227
Score = 31.9 bits (69), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 772 GKXXGGXXGNXGGGFXGXPXGGFXRGXKRG 683
G+ GG G GGG G GGF G RG
Sbjct: 42 GRGRGGGGGGGGGGGGGRGGGGFHSGGNRG 71
>AC005393-3|AAC28913.1| 318|Homo sapiens FBRL_HUMAN protein.
Length = 318
Score = 31.9 bits (69), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 772 GKXXGGXXGNXGGGFXGXPXGGFXRGXKRG 683
G+ GG G GGG G GGF G RG
Sbjct: 39 GRGRGGGGGGGGGGGGGRGGGGFHSGGNRG 68
>X52426-1|CAA36673.1| 420|Homo sapiens cytokeratin 13 protein.
Length = 420
Score = 31.5 bits (68), Expect = 5.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 760 GGXXGNXGGGFXGXPXGGFXRGXKRGXISXGXXXXG 653
GG G GGG+ G GGF G G + G G
Sbjct: 63 GGYGGGLGGGYGGGLGGGFGGGFAGGFVDFGACDGG 98
>X14640-1|CAA32786.1| 458|Homo sapiens keratin 13 protein.
Length = 458
Score = 31.5 bits (68), Expect = 5.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 760 GGXXGNXGGGFXGXPXGGFXRGXKRGXISXGXXXXG 653
GG G GGG+ G GGF G G + G G
Sbjct: 63 GGYGGGLGGGYGGGLGGGFGGGFAGGFVDFGACDGG 98
>BC126184-1|AAI26185.1| 458|Homo sapiens keratin 13 protein.
Length = 458
Score = 31.5 bits (68), Expect = 5.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 760 GGXXGNXGGGFXGXPXGGFXRGXKRGXISXGXXXXG 653
GG G GGG+ G GGF G G + G G
Sbjct: 63 GGYGGGLGGGYGGGLGGGFGGGFAGGFVDFGACDGG 98
>BC077718-1|AAH77718.2| 458|Homo sapiens keratin 13 protein.
Length = 458
Score = 31.5 bits (68), Expect = 5.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 760 GGXXGNXGGGFXGXPXGGFXRGXKRGXISXGXXXXG 653
GG G GGG+ G GGF G G + G G
Sbjct: 63 GGYGGGLGGGYGGGLGGGFGGGFAGGFVDFGACDGG 98
>BC002661-1|AAH02661.3| 458|Homo sapiens keratin 13 protein.
Length = 458
Score = 31.5 bits (68), Expect = 5.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 760 GGXXGNXGGGFXGXPXGGFXRGXKRGXISXGXXXXG 653
GG G GGG+ G GGF G G + G G
Sbjct: 63 GGYGGGLGGGYGGGLGGGFGGGFAGGFVDFGACDGG 98
>AK223077-1|BAD96797.1| 458|Homo sapiens keratin 13 isoform a
variant protein.
Length = 458
Score = 31.5 bits (68), Expect = 5.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 760 GGXXGNXGGGFXGXPXGGFXRGXKRGXISXGXXXXG 653
GG G GGG+ G GGF G G + G G
Sbjct: 63 GGYGGGLGGGYGGGLGGGFGGGFAGGFVDFGACDGG 98
>AK223051-1|BAD96771.1| 458|Homo sapiens keratin 13 isoform a
variant protein.
Length = 458
Score = 31.5 bits (68), Expect = 5.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 760 GGXXGNXGGGFXGXPXGGFXRGXKRGXISXGXXXXG 653
GG G GGG+ G GGF G G + G G
Sbjct: 63 GGYGGGLGGGYGGGLGGGFGGGFAGGFVDFGACDGG 98
>AF049259-1|AAC35754.1| 420|Homo sapiens keratin 13 protein.
Length = 420
Score = 31.5 bits (68), Expect = 5.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 760 GGXXGNXGGGFXGXPXGGFXRGXKRGXISXGXXXXG 653
GG G GGG+ G GGF G G + G G
Sbjct: 63 GGYGGGLGGGYGGGLGGGFGGGFAGGFVDFGACDGG 98
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,168,416
Number of Sequences: 237096
Number of extensions: 2487741
Number of successful extensions: 6341
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6325
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14871214694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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