Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B10
(987 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.015
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.3
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 28 1.8
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.1
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 9.4
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.015
Identities = 28/123 (22%), Positives = 34/123 (27%), Gaps = 4/123 (3%)
Frame = +1
Query: 625 PXTPEXPQKXXAQ----PPRXTPLXPXPPPXXRPXTXQNPAPXSXALLXXXXXXXXXXXX 792
P P P+ A PP+ P PPP P T + P P S +
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 793 XXXXXXXXXXXXXXXXXXXXXXXXXVPPPTXPXLXPAPXPPXQRPLXXPTXXEAPPPAPX 972
PP+ P P P P P+ P PP AP
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP-PSAPPSLPMGAPAAPPLPPSAPI 455
Query: 973 XXP 981
P
Sbjct: 456 APP 458
Score = 30.3 bits (65), Expect = 0.44
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 874 PPTXPXLXPAPXP-PXQRPLXXPTXXEAPPPAPXXXPA 984
PP+ P P P P PL P APPPAP PA
Sbjct: 450 PPSAPIAPPLPAGMPAAPPL--PPAAPAPPPAPAPAPA 485
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 874 PPTXPXLXPAPXPPXQRPLXXPTXXEAPPPAPXXXPA 984
PP P AP P P P AP P P PA
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 909 PPXTTPPXPPHXXRGPPPXPXPXP 980
PP PP PP PP P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 912 PXTTPPXPPHXXRGPPPXPXPXP 980
P PP P GPPP P P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +1
Query: 871 PPPTXP-XLXPAPXP-PXQRPLXXPTXXEAPPPAP 969
PPP P + P P P P P P PPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -2
Query: 737 GAGFWXVCGRXXGGGXGXRGVXRGGCAXXFW 645
GAG CGR GG G R GC FW
Sbjct: 209 GAGRGGFCGRHGRGGFGKRSGLH-GCREEFW 238
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 731 GFWXVCGRXXGGGXGXRGVXRGGCAXXFWGXSGVXGXXGG 612
GF G GG G RG RGG G G G GG
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = -2
Query: 980 GXXXGAGGGASXXVGXXRGRCXGGXGA-GXKXGXVGGGT 867
G G GGG G RG GG G G G GG +
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSS 61
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 874 PPTXPXLXPAPXPPXQRPLXXPTXXEAPPPAPXXXP 981
PP+ P P P + P P PPP+P P
Sbjct: 124 PPSAPA-PPTPQSELRPPTSAPPRPSIPPPSPASAP 158
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = +1
Query: 868 VPPPTXPXLXPAPX--PPXQRPLXXPTXXEAPPPAPXXXPA 984
+PPP+ P P PP L P AP +P P+
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = +1
Query: 871 PPPTXPXLX--PAPXPPXQRPLXXPTXXEAPPPAPXXXP 981
PP P + P P P P+ P+ P PAP P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 9.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -2
Query: 980 GXXXGAGGGASXXVGXXRGRCXGGXGAGXKXGXVGG 873
G G GG G G GG G G + G GG
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.136 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,802
Number of Sequences: 5004
Number of extensions: 14398
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
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