Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B07
         (892 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    26   0.46 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.60 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   7.4  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   9.8  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 208 GARVVPGAAREPRHRPAH 261
           G R  PG AR  RH PAH
Sbjct: 327 GGRRGPGPARSRRHLPAH 344


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 306 CGISRPTTWRPCNTGTSDPRFLVGGNGKVYEGSG 407
           C   +PT WR C+  T +  F +  +  +   SG
Sbjct: 878 CENGKPTCWRECDKATCEKLFRMKKSSALRPASG 911


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 85   APRHGPPPLGSCTRARSQLASHRNSSRLRRRQ*KAMGRFDPGARVVPGA 231
            A  +GP   G  TRA   LA +    R+++R        DP  R+ P A
Sbjct: 2582 AKSYGPGEAGEFTRAGGFLAYYEICERVKKRGWTVTR--DPQGRIGPYA 2628


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 198  PSHCFLLTTSQSAAISVRSELRASASTTAEWRRAMSRSG 82
            P HC        A I+V++ + ++ S  A W+  +  +G
Sbjct: 1191 PIHCQTEQDVPEAPIAVKALVMSTDSILASWKPPVEPNG 1229


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 299 ELVRNIQTNHMEALQYWD 352
           EL +  +TN M+ +Q+W+
Sbjct: 230 ELPQQHKTNVMDVMQWWE 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,889
Number of Sequences: 336
Number of extensions: 3597
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)