Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B07
         (892 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)                   29   3.8  
SB_52915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)                     28   8.8  

>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
          Length = 1052

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 520 RSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTR 368
           +S+++  PL ++   LP N  P+    YP    PT   P P+   PLP  R
Sbjct: 613 KSSTNRYPLPTNRYPLPTNRYPLPTNRYP---LPTNRYPIPTNRYPLPKNR 660


>SB_52915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +3

Query: 333 RPCNTGTSDPRFLVGGNGKVYEGSGWLHVGAHTYGYNSRSIGVAFIGNFNTDEPSG 500
           R C  GT   +    G  K+Y G GW +   H YG N  S    + G +  D+ SG
Sbjct: 70  RRCGYGTYSIKE-TSGYRKIYSG-GWKNDKRHGYGTNFYSPTEYYEGEWYADKRSG 123


>SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)
          Length = 611

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 517 SASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPT 371
           S+SS++ + SS L     +TP    L P   + + S P PS  + LPPT
Sbjct: 282 SSSSLSSVPSSFLA----STPRAATLSPLSSSSSSSSPRPSRDIELPPT 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,021,016
Number of Sequences: 59808
Number of extensions: 529942
Number of successful extensions: 2026
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2012
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)