Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B07
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.5  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      22   8.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 207  GIK--PSHCFLLTTSQSAAISVRSELRASASTTAEWRRAMSRSG 82
            G+K  P HC     +  A I++++ + +S S    WR     +G
Sbjct: 1165 GVKSAPIHCQTEQDAPEAPIAIKALVMSSESILVSWRPPSQPNG 1208


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 160 CYFCEKRAESEREYNC 113
           C  C++R E +  Y+C
Sbjct: 274 CSLCQRRFEEQGNYSC 289


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 360 PRFLVGGNGKVYEGSGWLH 416
           P FL  G+GK Y  SG  H
Sbjct: 230 PTFLCKGDGKWYLPSGGCH 248


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = -1

Query: 484 VLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRXRGS 356
           +L +P     +  ++ P         PEP Y + +PP    GS
Sbjct: 23  LLIIPSKCEAVSNDMQPLEARSADLVPEPRYIIDVPPRCPPGS 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,536
Number of Sequences: 438
Number of extensions: 4632
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)