Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B07
(892 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha ch... 31 0.78
At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha ch... 31 0.78
At2g02960.5 68415.m00248 zinc finger (C3HC4-type RING finger) fa... 31 1.4
At2g02960.4 68415.m00247 zinc finger (C3HC4-type RING finger) fa... 31 1.4
At2g02960.3 68415.m00246 zinc finger (C3HC4-type RING finger) fa... 31 1.4
At2g02960.2 68415.m00245 zinc finger (C3HC4-type RING finger) fa... 31 1.4
At2g02960.1 68415.m00244 zinc finger (C3HC4-type RING finger) fa... 31 1.4
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ... 30 1.8
At2g17220.2 68415.m01989 protein kinase, putative similar to pro... 30 2.4
At2g17220.1 68415.m01988 protein kinase, putative similar to pro... 30 2.4
At1g64430.1 68414.m07302 expressed protein 30 2.4
At2g02630.1 68415.m00202 DC1 domain-containing protein contains ... 29 3.1
At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro... 29 5.5
At5g05680.1 68418.m00625 nuclear pore complex protein-related co... 29 5.5
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ... 28 7.2
At1g68160.1 68414.m07786 expressed protein 28 7.2
At5g37850.1 68418.m04557 pfkB-type carbohydrate kinase family pr... 28 9.6
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t... 28 9.6
At2g36690.1 68415.m04501 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 9.6
At1g14260.2 68414.m01690 zinc finger (C3HC4-type RING finger) fa... 28 9.6
At1g14260.1 68414.m01689 zinc finger (C3HC4-type RING finger) fa... 28 9.6
>At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha
chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
1 (MCCA) nearly identical to SP|Q42523
Methylcrotonyl-CoA carboxylase alpha chain,
mitochondrial precursor (EC 6.4.1.4)
(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
alpha subunit) {Arabidopsis thaliana}
Length = 734
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 521 PQRLQHRAARLVRVEVADECDSDGPRVVPVGVRADVQPAGA 399
P R+ H A + + +E +EC+ G ++ +GVR QP G+
Sbjct: 539 PFRVHHEAKQTIELEWNNECEGTGSNLISLGVR--YQPDGS 577
>At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha
chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
1 (MCCA) nearly identical to SP|Q42523
Methylcrotonyl-CoA carboxylase alpha chain,
mitochondrial precursor (EC 6.4.1.4)
(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
alpha subunit) {Arabidopsis thaliana}
Length = 714
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 521 PQRLQHRAARLVRVEVADECDSDGPRVVPVGVRADVQPAGA 399
P R+ H A + + +E +EC+ G ++ +GVR QP G+
Sbjct: 519 PFRVHHEAKQTIELEWNNECEGTGSNLISLGVR--YQPDGS 557
>At2g02960.5 68415.m00248 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 275
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 415 CSQP-EPSYTLPLPPTRXRGSDVPVLQGLHVVGLDIPHQLLAA 290
C QP +P YT P PP + + + + G + GLD+ L A
Sbjct: 88 CHQPYQPGYTAPPPPLQPEETTIDIGGGWTISGLDVHDPRLLA 130
>At2g02960.4 68415.m00247 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 415 CSQP-EPSYTLPLPPTRXRGSDVPVLQGLHVVGLDIPHQLLAA 290
C QP +P YT P PP + + + + G + GLD+ L A
Sbjct: 88 CHQPYQPGYTAPPPPLQPEETTIDIGGGWTISGLDVHDPRLLA 130
>At2g02960.3 68415.m00246 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 415 CSQP-EPSYTLPLPPTRXRGSDVPVLQGLHVVGLDIPHQLLAA 290
C QP +P YT P PP + + + + G + GLD+ L A
Sbjct: 88 CHQPYQPGYTAPPPPLQPEETTIDIGGGWTISGLDVHDPRLLA 130
>At2g02960.2 68415.m00245 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 415 CSQP-EPSYTLPLPPTRXRGSDVPVLQGLHVVGLDIPHQLLAA 290
C QP +P YT P PP + + + + G + GLD+ L A
Sbjct: 88 CHQPYQPGYTAPPPPLQPEETTIDIGGGWTISGLDVHDPRLLA 130
>At2g02960.1 68415.m00244 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 415 CSQP-EPSYTLPLPPTRXRGSDVPVLQGLHVVGLDIPHQLLAA 290
C QP +P YT P PP + + + + G + GLD+ L A
Sbjct: 88 CHQPYQPGYTAPPPPLQPEETTIDIGGGWTISGLDVHDPRLLA 130
>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 922
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = -1
Query: 274 EGCDCVLDDDEAHGPRQVRHVHRDQTVPLLF---TDDVAIGCYFCEKRAESERE-YNC 113
E CD L A P+QVR+ H +PL + T D+ C CE + E Y C
Sbjct: 764 EECDYALCFKCATLPQQVRYKHDKHILPLSYGKKTSDMTYWCEACEGKINPEEGFYRC 821
>At2g17220.2 68415.m01989 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
Swiss-Prot:Q06548
Length = 413
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 719 KNGAMGYAXIMLRVLDGVHVLQPLRPASY--LV*SFRPGLSEAMSCR 585
K+ G+ ++ +L G+H L P RP L +P LSE R
Sbjct: 276 KSDVYGFGVVLAEILTGLHALDPTRPTGQHNLTEWIKPHLSERRKLR 322
>At2g17220.1 68415.m01988 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
Swiss-Prot:Q06548
Length = 414
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 719 KNGAMGYAXIMLRVLDGVHVLQPLRPASY--LV*SFRPGLSEAMSCR 585
K+ G+ ++ +L G+H L P RP L +P LSE R
Sbjct: 277 KSDVYGFGVVLAEILTGLHALDPTRPTGQHNLTEWIKPHLSERRKLR 323
>At1g64430.1 68414.m07302 expressed protein
Length = 559
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 19 SPTRELP*D--FDCPRCLTCLARAAPRHGPPPLGSCTRARSQ 138
SP E+P CP CL +A A P+HG + SC R Q
Sbjct: 185 SPAEEVPFGKIVRCPSCLIAIAVAQPQHG-VQIVSCANCRYQ 225
>At2g02630.1 68415.m00202 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 440
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 271 GCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESEREYNC 113
GCD +L + A PR+ H + L+F +D C C R + Y C
Sbjct: 193 GCDFILHETCADAPRRKVHPLHPHPLKLIFYEDNCFHCKAC-WRTSTAFGYRC 244
>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe},
oligopeptide transporter Opt1p [Candida albicans]
GI:2367386; contains Pfam profile PF03169: OPT
oligopeptide transporter protein
Length = 755
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 384 GKVYEGSGWLHVGAHTYGYNSRSIGVAFIGNF 479
G +Y G +V TYGY S S + F+G+F
Sbjct: 501 GYLYPGKPLANVAFKTYGYISMSQALYFVGDF 532
>At5g05680.1 68418.m00625 nuclear pore complex protein-related
contains weak similarity to Nuclear pore complex protein
Nup88 (Nucleoporin Nup88) (88 kDa nuclear pore complex
protein) (Swiss-Prot:Q99567) [Homo sapiens]
Length = 810
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 158 AADCDVVSKKQWDGLIPVHVS 220
+ +C V K WD L+P+HVS
Sbjct: 545 SGECIVAEMKTWDLLLPIHVS 565
>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 304 QLLAASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFC 149
Q+L+ + C+ L A+ PR+ HV+R+ LL + + C+ C
Sbjct: 409 QILSEPFYSCKQCNFKLHQKCANHPRKKHHVYRNLPFTLLTSGNEIFQCWLC 460
>At1g68160.1 68414.m07786 expressed protein
Length = 273
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -1
Query: 217 HVHRDQTVPLLFTDDVAIGCYFCEKRAESEREYNCRVEAGHVEERRVPSTSSSA 56
++ T+P D+A+ C + ++ E NC A + ++V S+S S+
Sbjct: 104 YIQIGNTLPDKSIRDIALRCRWLRRKRRKSEELNCGRRASSSKGKQVESSSKSS 157
>At5g37850.1 68418.m04557 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 309
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -1
Query: 319 LDIPHQLLAASVRPAEGCDCVLDDD-EAHGPRQVRHVHRDQTVPL 188
L++ ++L + + CD V+ D+ + + P ++ HV+R++ VPL
Sbjct: 106 LEVINKLRSVNPNLTYVCDPVMGDEGKLYVPEELVHVYREKVVPL 150
>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
T15B16.10 similar to A. thaliana CHP-rich proteins
encoded by T10M13, GenBank accession number AF001308
Length = 667
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -1
Query: 307 HQLLAASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEK 143
H + S CD +L + A PR+ HV ++ + L+ ++ GC C K
Sbjct: 411 HPISPQSFYGCMDCDFILHQNCAGFPRRKWHVLHNERLALVTSEVNIFGCSACHK 465
>At2g36690.1 68415.m04501 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to IDS3 [Hordeum
vulgare][GI:4514655], leucoanthocyanidin dioxygenase
[SP|P51091][Malus domestica]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 366
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = -1
Query: 427 CAPTCSQPEPSYTLPLPPTRXRGSDVPVLQGLHVVGLDIPHQLLAASVRPAEG 269
C P C PEP TL +PP G +LQ V GL I ++ +V P G
Sbjct: 223 CYPPC--PEPELTLGMPPHSDYGFLTLLLQD-EVEGLQILYRDEWVTVDPIPG 272
>At1g14260.2 68414.m01690 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 415 CSQP-EPSYTLPLPPTRXRGSDVPVLQGLHVVGLDIPHQLLAA 290
C QP + YT P PP + + + + G + GLD+ L A
Sbjct: 102 CHQPYQAGYTSPPPPPQSEETTIDIGGGWRISGLDLDDPRLLA 144
>At1g14260.1 68414.m01689 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 415 CSQP-EPSYTLPLPPTRXRGSDVPVLQGLHVVGLDIPHQLLAA 290
C QP + YT P PP + + + + G + GLD+ L A
Sbjct: 102 CHQPYQAGYTSPPPPPQSEETTIDIGGGWRISGLDLDDPRLLA 144
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,846,127
Number of Sequences: 28952
Number of extensions: 358840
Number of successful extensions: 1413
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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