Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B06
(1001 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22060.1 68414.m02759 expressed protein 33 0.30
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 2.1
At1g61080.1 68414.m06877 proline-rich family protein 30 2.1
At1g53800.1 68414.m06123 expressed protein 30 2.1
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 30 2.8
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 30 2.8
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 29 3.7
At4g06526.1 68417.m00938 hypothetical protein 29 4.9
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 6.4
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote... 29 6.4
At5g55540.1 68418.m06919 expressed protein 28 8.5
At4g34920.1 68417.m04951 1-phosphatidylinositol phosphodiesteras... 28 8.5
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 28 8.5
>At1g22060.1 68414.m02759 expressed protein
Length = 1999
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 207 ESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINE 317
E MLDT +S++ E++ + D +LSLKF + E
Sbjct: 1932 EEMLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGE 1968
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXP 938
P +PP P PP P PP PP P
Sbjct: 493 PVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPP 525
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPP 929
P +PP P PP P PP PP
Sbjct: 447 PVYSPPPPPPPPPPPPVYSPPPPPPPPPPP 476
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPP 929
P +PP P PP P PP PP
Sbjct: 478 PVYSPPPPSPPPPPPPVYSPPPPPPPPPPP 507
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +3
Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXPLSSXGXXGXP 968
P PP P P PP PP P+ + G G P
Sbjct: 549 PPPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMPMGNSGSGGPP 591
>At1g53800.1 68414.m06123 expressed protein
Length = 568
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 525 PLKXKQPEDSKRPVAEPTETTPTNVSREEMEFXTESNVRDVDVR 656
P+ ++ R AEP + TPT S + EF +S V+ V VR
Sbjct: 284 PVGVERRRRRPRSDAEPRKKTPTKKSTRDSEFERQSQVQVVKVR 327
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXPLS 944
P PP P PP P PP PP P S
Sbjct: 385 PPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPS 419
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 849 APPXPXXPPXXXPXXXPPXXXXXXXPPXXP 938
+PP P PP P PP PP P
Sbjct: 375 SPPSPPPPPPPPPPPPPPPPPPPPPPPPPP 404
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 849 APPXPXXPPXXXPXXXPPXXXXXXXPPXXP 938
+PP P PP P PP PP P
Sbjct: 378 SPPPPPPPPPPPPPPPPPPPPPPPPPPPPP 407
>At1g49750.1 68414.m05579 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560
Length = 494
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXP 938
P PP P PP P PP PP P
Sbjct: 58 PADCPPPPPPPPCPPPPSPPPCPPPPSPPPSPP 90
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXPL 941
P PP P PP P PP PP L
Sbjct: 67 PPPCPPPPSPPPCPPPPSPPPSPPPPQLPPPPQL 100
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +3
Query: 852 PPXPXXPPXXXPXXXPPXXXXXXXPPXXPLSSXGXXGXP 968
PP P P P PP PP P+S G P
Sbjct: 398 PPPPKKGPAAPPPPPPPGKKGAGPPPPPPMSKKGPPKPP 436
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 729 WTAXGGRGSXLQLSRSHWXSGLSPSGRQRPARCSRWXTPSLH 604
W RG+ L+L+RS W G++P R A S W H
Sbjct: 429 WVGHLTRGA-LRLNRSLWGGGVTPVATCRQALLSGWLYEKFH 469
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +3
Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXPLSS 947
P +PP P P P PP PP P+ S
Sbjct: 723 PVHSPPPPVQSPPPPPVFSPPPPAPIYSPPPPPVHS 758
>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
protein-like (HSP26.5-P) contains Pfam profile: PF00011
Hsp20/alpha crystallin family; identified in Scharf,
K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 232
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/79 (15%), Positives = 40/79 (50%)
Frame = +3
Query: 189 FSPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQISIHLPGY 368
F+P + E T + + L ++++ + ++ ++ + + + D Y++ +PG
Sbjct: 88 FTPTLNEFFPPT--IGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGL 145
Query: 369 EQKDINVKAKNGVLMVQAN 425
++D+ + +G+L ++ +
Sbjct: 146 TKEDVKITVNDGILTIKGD 164
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 267 DDMMKELSLKFPSIINEGRVEGDKYQISIH 356
D + SL PSI+ EGR + K+QI+ H
Sbjct: 866 DPSSPDSSLLVPSILEEGRGKTQKWQINTH 895
>At4g34920.1 68417.m04951 1-phosphatidylinositol
phosphodiesterase-related contains weak similarity to
1-phosphatidylinositol phosphodiesterase precursor (EC
3.1.4.10) (Phosphatidylinositol-specific phospholipase
C) (PI-PLC). (Swiss-Prot:P34024) [Listeria
monocytogenes]
Length = 318
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 192 SPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKF 299
S Y++++ +DT W+ + ++HL + S KF
Sbjct: 209 SDYLKDNWIDTDLPWTKFQSNLKHLSEQQPTSSRKF 244
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXP 938
P A P P PP P PP PP P
Sbjct: 268 PPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAP 300
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,353
Number of Sequences: 28952
Number of extensions: 354187
Number of successful extensions: 1862
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1764
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2450812896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -