Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B05
         (958 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   5.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   5.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   9.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 882 PPXPXXPXPXPXXFGP 929
           PP P  P P P   GP
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 886 PXPKXPXPPPXXSXP 930
           P P  P PPP  S P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 133  LYANETSVSDSKLEDDLYNSILVADY 210
            L  NET  SD   +  +  SI+V+DY
Sbjct: 969  LNVNETVCSDYFSQGGVIESIMVSDY 994


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 204 RLRPFR*KEQTDLRGQEERSHHKCRKQTHTKQQ--DELHGVRLPAMAPRLQRYR 359
           R    R +++   R   ERS  + R + + K +  D+LH V    +  R  R R
Sbjct: 233 RYEDSRHEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLRERTSRRR 286


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 389 LIFAENNIKLMYKRDGLALTLDDENSNDGRLAYGDGKDKTSPKVS 523
           L   E  IK+ ++     +    EN + G    GDG  + SP+ S
Sbjct: 307 LCLTERQIKIWFQNR--RMKWKKENKSKGTPGSGDGDTEISPQTS 349


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 131 DATKRHKNNLNGFHLLRVGFSASTRTDIKILRN 33
           D  + HKN L  + + ++ F      DIK+  N
Sbjct: 410 DVFQEHKNTLPQYTVQQLDFPGIEIADIKLTTN 442


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 161 TPNSKTIFTTASSLPITTIP 220
           TP +  I  + +++PIT++P
Sbjct: 841 TPTTSVISMSGTTVPITSLP 860


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 367 TPGRYLWSLGAIAGRRTP 314
           TPG + +S+ A+A   TP
Sbjct: 304 TPGSFNFSMAALATEHTP 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,159
Number of Sequences: 438
Number of extensions: 4293
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)