Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B03
         (1059 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   5.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   9.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 683 PSPVXXTPXPPPXXSXSGXPPSIPNXXSVXP 775
           P PV  TP PPP  S      S+P   S  P
Sbjct: 205 PEPVPSTPYPPP-GSLGSMGVSVPCGTSGNP 234


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/49 (26%), Positives = 17/49 (34%)
 Frame = +2

Query: 635 PPXHQPXPXXPPXXPXPSPVXXTPXPPPXXSXSGXPPSIPNXXSVXPPP 781
           PP +      P   P PS +   P  PP        P +P    +  PP
Sbjct: 139 PPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPP 187


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 215 LRXHQFGDQRSPPSPHPAGQ 156
           L  H+  D + PP PHP  Q
Sbjct: 725 LTPHEAFDVKLPPPPHPHHQ 744


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 215 LRXHQFGDQRSPPSPHPAGQ 156
           L  H+  D + PP PHP  Q
Sbjct: 617 LTPHEAFDVKLPPPPHPHHQ 636


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 712 PPXXLTLRXPTLHPQXXLCXPPPXXP 789
           PP    +R P LH    +C P    P
Sbjct: 95  PPIHHQIRPPILHDTQPMCNPQLQVP 120


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 194 DQRSPPSPHPAGQIRD 147
           DQRS PSP   G + +
Sbjct: 415 DQRSTPSPRVYGNVNE 430


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,668
Number of Sequences: 336
Number of extensions: 3383
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 30310518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)