Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B03
         (1059 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.37 
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    24   2.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.37
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
 Frame = +2

Query: 638 PXHQPXPXXPPXXPXP-SPVXXTPXPPPXXSXSGXPPSIPNXXSVXPPPXXLH 793
           P  QP P   P  P   SP   +  PPP     G PPS      +  P   +H
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPG-GPPGAPPSQNPSQMMISPASGIH 72


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 149 RGFVRLGAAM-VAXAGLRTDGHGVPXVARSKLRGAVQR 259
           +GFV LGA + V  +GL   G  +  V  + +RG  Q+
Sbjct: 89  KGFVHLGAGLAVGFSGLAA-GFAIGIVGDAGVRGTAQQ 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,448
Number of Sequences: 438
Number of extensions: 5999
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35306793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)