Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B02
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 375 PPXXXFPRGXKPWPXXXP 322
           PP   FP G  P+P   P
Sbjct: 162 PPMYPFPAGQYPYPILSP 179



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +2

Query: 59  NYAKPQTTQK*IQNCCFHRYSPGCVXRK 142
           N+  P       + CC+H  +PG   R+
Sbjct: 601 NFHGPHRLAARSRRCCYHAVAPGTDIRQ 628


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 375 PPXXXFPRGXKPWPXXXP 322
           PP   FP G  P+P   P
Sbjct: 54  PPMYPFPAGQYPYPILSP 71



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +2

Query: 59  NYAKPQTTQK*IQNCCFHRYSPGCVXRK 142
           N+  P       + CC+H  +PG   R+
Sbjct: 493 NFHGPHRLAARSRRCCYHAVAPGTDIRQ 520


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,542
Number of Sequences: 336
Number of extensions: 1016
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)