Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_A24
(1017 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.012
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.064
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.8
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 5.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.4
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 26 9.8
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 26 9.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.012
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 911 PXXPXXXXXXPXPPPXPPXXPSXXXPPXXPPPPP 1012
P P PPP PP + PP PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 32.3 bits (70), Expect = 0.11
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 941 PXPPPXPPXXPSXXXPPXXPPPP 1009
P P P PP P PP PPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPP 768
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.1 bits (72), Expect = 0.064
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 941 PXPPPXPPXXPSXXXPPXXPPPPP 1012
P PP PP P P PPPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 31.9 bits (69), Expect = 0.15
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 941 PXPPPXPPXXPSXXXPPXXPPPPP 1012
P PPP PP PP PPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPP--PPPPP 30
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 948 PPXXPPXPPPXXXPPXPXXPXP 1013
PP PP PPP P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP 26
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = +2
Query: 911 PXXPXXXXXXPXPPPXPPXXP-SXXXPPXXPPPPP 1012
P P P PP P P + PP P PPP
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 911 PXXPXXXXXXPXPPPXPPXXPSXXXPPXXPPPPP 1012
P P P PP PP P+ PP P P P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPA---PPPAPAPAP 484
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +1
Query: 901 PXXPXXPXXXXXXPXPPPXPPXXPLXPXXP 990
P P P P PP PP P P P
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +2
Query: 941 PXPPPXPPXXPSXXXPPXXPPPPP 1012
P PPP PP P PP P
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRP 274
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 950 PPXPPXXPSXXXPPXXPPPP 1009
PP P P PP PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734
Score = 26.6 bits (56), Expect = 5.6
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Frame = +2
Query: 941 PXPPPXP---PXXPSXXXPPXXPP--PPP 1012
P PPP P P PS P PP PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Frame = +2
Query: 941 PXPP---PXPPXXPSXXXPPXXPPPPP 1012
P PP P PP P P PPPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = -1
Query: 1011 GGGGGXXGGXXX-EGXXGGXGGGXG 940
GG GG GG G GG GGG G
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRG 33
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 7.4
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 971 PSXXXPPXXPPPPP 1012
PS PP PPPPP
Sbjct: 184 PSDYNPPPPPPPPP 197
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.8 bits (54), Expect = 9.8
Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Frame = -1
Query: 408 AHFAALVMSSVRRSEHLTLQSLPGLAPLLHQYRSLIWNNP*SFEPLRFVFVLDVSRL-LS 232
A+ + ++ +R + L + +A L + L++ N + F+LD +
Sbjct: 828 AYMRMMGLAGLRDASKAALLNANYMAKRLSSHYKLVYTNKNNL--CAHEFILDAREFKAT 885
Query: 231 CSTRHTQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQRTTKAKIINFCISIVSFELQVXE 52
T R + + P + N L EPT+ + ++ FC +++S ++ E
Sbjct: 886 AGVDATDIAKRLQDYSFHAPTLSWP-IANTLMIEPTESESMYEMDRFCDALISIRQEIRE 944
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 153 LVNVLASEPTQRTTK-AKIINFCISIVSFEL 64
L N L++ + TK AK++NFCI I F +
Sbjct: 63 LFNSLSARTFRNLTKCAKVVNFCILISLFNV 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,718
Number of Sequences: 5004
Number of extensions: 50471
Number of successful extensions: 294
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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