Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A23
         (951 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75550.1 68414.m08780 glycine-rich protein                          31   0.85 
At2g41260.2 68415.m05096 glycine-rich protein / late embryogenes...    30   2.0  
At2g41260.1 68415.m05095 glycine-rich protein / late embryogenes...    30   2.0  
At2g05440.2 68415.m00575 glycine-rich protein                          29   6.0  
At2g05440.1 68415.m00574 glycine-rich protein                          29   6.0  

>At1g75550.1 68414.m08780 glycine-rich protein 
          Length = 167

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRWGCX*XGGXXVXYTGXXVXGXXG 834
           GGG G G  G  GGG WG    GG    Y      G  G
Sbjct: 77  GGGGGGGGGGGGGGGGWGWGGGGGGGGWYKWGCGGGGKG 115


>At2g41260.2 68415.m05096 glycine-rich protein / late embryogenesis
           abundant protein (M17) identical to late-embryogenesis
           abundant M17 protein GI:3342551 from [Arabidopsis
           thaliana]
          Length = 280

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRWGC 894
           G G G G  G +GG RWGC
Sbjct: 119 GRGGGGGGGGGRGGCRWGC 137



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRWGC 894
           G G G G  G +GG RWGC
Sbjct: 174 GRGGGGGGGGGRGGCRWGC 192



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRWGC 894
           G G G G  G +GG RWGC
Sbjct: 229 GRGGGGGGGGGRGGCRWGC 247


>At2g41260.1 68415.m05095 glycine-rich protein / late embryogenesis
           abundant protein (M17) identical to late-embryogenesis
           abundant M17 protein GI:3342551 from [Arabidopsis
           thaliana]
          Length = 225

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRWGC 894
           G G G G  G +GG RWGC
Sbjct: 119 GRGGGGGGGGGRGGCRWGC 137



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRWGC 894
           G G G G  G +GG RWGC
Sbjct: 174 GRGGGGGGGGGRGGCRWGC 192


>At2g05440.2 68415.m00575 glycine-rich protein
          Length = 154

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRWGCX*XGGXXVXYTG 858
           GGG G G  G  GGG  G    GG    Y G
Sbjct: 54  GGGGGHGHGGHNGGGGHGLDGYGGGGGHYGG 84


>At2g05440.1 68415.m00574 glycine-rich protein
          Length = 127

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRWGCX*XGGXXVXYTG 858
           GGG G G  G  GGG  G    GG    Y G
Sbjct: 54  GGGGGHGHGGHNGGGGHGLDGYGGGGGHYGG 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,178,222
Number of Sequences: 28952
Number of extensions: 241738
Number of successful extensions: 757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2285480280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)