Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A22
         (1121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.29 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.68 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.68 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +1

Query: 376 ARARXXAXPPPPXPXXXXXXXXXXXXXXAFRXXXPPPPRPPXRXXPGGPPRP 531
           A A     PPPP P              +     PPPP PP     G  P P
Sbjct: 303 ALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 478 PPPPRPPXRXXPGGPPRPXP 537
           PPPP PP    P  PP P P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 478 PPPPRPPXRXXPGGPPRPXP 537
           PPPP PP    P   P P P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 478 PPPPRPPXRXXPGGPPRPXP 537
           PPPP PP      GPP P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 478 PPPPRPPXRXXPGGPPRPXP 537
           PPPP PP     G PP P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 575  APXXXXXGXAPPAPXPXPXGXXXPAPSAG 661
            AP       APP P P       PAPS+G
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.150    0.567 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,196
Number of Sequences: 5004
Number of extensions: 7204
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 595662418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)