Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A22
         (1121 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 484 PPRPPXRXXPGGPPRPXP 537
           PP P     PGGPP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 8.6
 Identities = 10/22 (45%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
 Frame = +1

Query: 478 PPPPR--PPXRXXPGGPPRPXP 537
           PP P   PP    PG PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 460  AFRXXXPPPPRPP 498
            A+R   PPPP PP
Sbjct: 1349 AWRQQQPPPPPPP 1361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.150    0.567 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,922
Number of Sequences: 438
Number of extensions: 1602
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37837314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)