Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A21
         (963 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    26   6.9  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   9.1  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   9.1  

>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 383 KNIDDANEDTIKXVCXDYHERIARLEDEKFDLEYIVKRKD 502
           +NI D++ED I  +   Y +  A   DE+   E+ +  KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
 Frame = +2

Query: 404 EDTIKXVCXDYHERIARLEDEKFDLEYIVKRKDMEISXLNSQVN------DXXGQFV-KP 562
           ED+ +    D+H   A  E+EK     + K   ME+  +N  V+      D   Q + +P
Sbjct: 23  EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVDSSSTETDIEMQVIQQP 82

Query: 563 TLKKVSPYENXFAXSRRRPXNSTXVTN 643
           T+ K  P        R+   N+    N
Sbjct: 83  TIPKKPPVSAHRRGPRKHRGNANSQLN 109


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 422  VCXDYHERIARLEDEKFDLEYIVKRKDMEISXLNSQVNDXXGQFVKPTLKKVSPYENXFA 601
            +C    + +   + + +DL++       E S L+ QVND   Q  K T +K+S  +   A
Sbjct: 899  LCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQIALA 957

Query: 602  XSR 610
             S+
Sbjct: 958  DSK 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,429
Number of Sequences: 5004
Number of extensions: 32969
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)