Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A21
         (963 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0121 - 12722492-12722920                                         29   4.2  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    29   5.5  
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597...    29   7.3  
05_01_0545 - 4756266-4757510                                           28   9.6  

>01_03_0121 - 12722492-12722920
          Length = 142

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 184 PEAR*GAQAHGGGLQSQKGEEGFHD 258
           PEAR G  A GGG +SQ+   GF D
Sbjct: 80  PEARDGGVATGGGARSQEAGGGFGD 104


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 883 PPPSSPXCYXPXISXLXLSPXPAPPXP 963
           PPP  P    P      +SP PAPP P
Sbjct: 89  PPPPPPLLPTPPPPPASISPTPAPPLP 115


>03_02_0155 -
           5974118-5974173,5974242-5974314,5974393-5974500,
           5975189-5976914,5977065-5977620,5978008-5978485
          Length = 998

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 16/56 (28%), Positives = 19/56 (33%)
 Frame = +1

Query: 796 PTXXPLHXDVPHTXVXSAHTHXTXYFXLXPPPSSPXCYXPXISXLXLSPXPAPPXP 963
           P   P     P   +  AH        L PPP  P  + P  +    SP P  P P
Sbjct: 42  PMPGPPSQPPPPQAMYQAHPQYPMPGSLPPPPPRPPSFAPENALPPSSPPPPSPPP 97


>05_01_0545 - 4756266-4757510
          Length = 414

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 410 YLRWRRQCS*VYRTSPR*CASFQ-QLYVPAP 321
           Y R  RQC+  Y   P  CA+FQ + +VP+P
Sbjct: 352 YQRTPRQCAAFYAAPPVDCAAFQCKPFVPSP 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,999,406
Number of Sequences: 37544
Number of extensions: 294267
Number of successful extensions: 823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)