Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A21
         (963 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    29   3.5  
At4g18960.1 68417.m02793 floral homeotic protein AGAMOUS (AG) co...    29   6.1  

>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 886 PPSSPXCYXPXISXLXLSPXPAPPXP 963
           PP SP    P +S   +SP PAP  P
Sbjct: 100 PPQSPPASAPTVSPPPVSPPPAPTSP 125


>At4g18960.1 68417.m02793 floral homeotic protein AGAMOUS (AG)
           contains an ACG start codon (Riechmann, Ito, and
           Meyerowitz, Mol Cell Biol, 1999); supported by cDNA
           gi|16155|emb|X53579
          Length = 252

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +1

Query: 535 RPXRPIRQAHTKEGLPIRKXIRXLQKKAXEFHXRNQLKVXKKXESPXEXXDXETQPXXSX 714
           R  R I +  +K+   +   I  +QK+  + H  NQ+   K  E+          P  S 
Sbjct: 146 RLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENERNNPSISLMPGGSN 205

Query: 715 AXRXIPPXRTR 747
             + +PP +T+
Sbjct: 206 YEQLMPPPQTQ 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,281,500
Number of Sequences: 28952
Number of extensions: 202915
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2324382072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)