Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A16
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    34   0.033
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    30   0.41 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.71 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.6  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   2.2  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   8.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = +1

Query: 553  PPERASQKSTLKSEVAKPXRTIKIPGVXPAKLPPCRSPXSD--PARLPDTCPPFSL-REA 723
            PP     K    S  A   R   +P +  +K PP   P +D  P  +P T PP  +    
Sbjct: 991  PPSAPLSKPVSTSPAAPLARVPPVPKLS-SKAPPVPLPSADAPPIPVPSTAPPVPIPTST 1049

Query: 724  XPLPXTSPCTXLXPTPXLAP 783
             P+P +S      P P  AP
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAP 1069


>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
           Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 550 RPPERASQKSTLKSEVAKPXRTIKIPGVXPAKLPPCRSPXSDPARLPDTCPPFSLRE 720
           +P + A Q  ++  E  KP    KIP + PA L   +S  SDP  +   C    L E
Sbjct: 189 KPMKEAFQ--SILGETLKPRLAKKIPTLYPAMLSLLKSKKSDPDSIRQVCIEQKLNE 243


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 19/71 (26%), Positives = 25/71 (35%)
 Frame = +1

Query: 553 PPERASQKSTLKSEVAKPXRTIKIPGVXPAKLPPCRSPXSDPARLPDTCPPFSLREAXPL 732
           PP    + +     +    RT   P   P  LPP   P   P+  P    P     A PL
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSL--PMGAPAAPPL 449

Query: 733 PXTSPCTXLXP 765
           P ++P     P
Sbjct: 450 PPSAPIAPPLP 460


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/53 (35%), Positives = 20/53 (37%)
 Frame = -3

Query: 782 GARXGVGXRXVQGEVXGXGHASRREKGGQVSGKRAGSEXGERQGGSLAGXTPG 624
           GAR G   R  +G   G    SR   GG   G   G   G   GGS  G   G
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGG 181


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 550 RPPERASQKSTLKSEVAKPXRTIKIPGVXPAKLPPCRSP 666
           +P    S K +L S +  P   +K+P    +K PP + P
Sbjct: 189 KPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVP 227


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 537  KSASNAAFLRVPGLLLAFCSHVLSCVIPLILWIT 436
            KSAS     R P      C  ++SC+ P  L++T
Sbjct: 1249 KSASR--IFRTPNFWAVLCGTIVSCLFPKFLFMT 1280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,138
Number of Sequences: 5004
Number of extensions: 44307
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)