Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_A13
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 171 6e-43
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 169 2e-42
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 162 3e-40
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 31 1.6
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 29 5.0
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 29 6.6
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 8.7
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 28 8.7
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 171 bits (416), Expect = 6e-43
Identities = 80/153 (52%), Positives = 104/153 (67%)
Frame = +3
Query: 330 RIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVR 509
RIPERVVHA+GA A G+FE THD+T + A S G +TP+ VRFSTV E GS +T+R
Sbjct: 70 RIPERVVHARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIR 129
Query: 510 DPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFPSFIHTQKRNPXTHLKDPDMFWDLLT 689
DPRGFAVKFYT +G WDL+GNN P+FFIRD FP IH K NP +H+++ +D L+
Sbjct: 130 DPRGFAVKFYTREGNWDLLGNNFPVFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLS 189
Query: 690 LRPETIHHLLYLFGXRGYS*WLRXMNGYGSHTF 788
PE++H +LF G R M+G+G +T+
Sbjct: 190 HHPESLHTFFFLFDDVGIPTDYRHMDGFGVNTY 222
Score = 35.9 bits (79), Expect = 0.043
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +2
Query: 209 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 325
TT +GAPV TVG GP LL+D + +++++ F R
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFAR 68
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 169 bits (412), Expect = 2e-42
Identities = 80/155 (51%), Positives = 104/155 (67%)
Frame = +3
Query: 330 RIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVR 509
RIPERVVHA+GA A G+FEVTHDIT + A + G +TP+ VRFSTV E GS +T+R
Sbjct: 58 RIPERVVHARGASAKGFFEVTHDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLR 117
Query: 510 DPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFPSFIHTQKRNPXTHLKDPDMFWDLLT 689
DPRGFA+KFYT +G WDLVGNN P+FFIRD FP +H+ K NP +H+++ D +
Sbjct: 118 DPRGFAIKFYTREGNWDLVGNNFPVFFIRDGMKFPDMVHSLKPNPKSHVQENWRILDFFS 177
Query: 690 LRPETIHHLLYLFGXRGYS*WLRXMNGYGSHTFXL 794
PE++H +LF G R M+G G +T+ L
Sbjct: 178 HHPESLHMFTFLFDDIGIPADYRHMDGSGVNTYTL 212
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 209 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 325
+T SGAPV TVG GP LL+D + ++++++FDR
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDR 56
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 162 bits (394), Expect = 3e-40
Identities = 78/155 (50%), Positives = 103/155 (66%)
Frame = +3
Query: 330 RIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVR 509
RIPERVVHA+GA A G+FEVTHDI+ + A + G +TP+ VRFSTV E GS +T+R
Sbjct: 58 RIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLR 117
Query: 510 DPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFPSFIHTQKRNPXTHLKDPDMFWDLLT 689
DPRGFAVKFYT +G +DLVGNN P+FFIRD FP +H K +P T++++ D +
Sbjct: 118 DPRGFAVKFYTREGNFDLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFS 177
Query: 690 LRPETIHHLLYLFGXRGYS*WLRXMNGYGSHTFXL 794
PE++H +LF G R M G+G +T+ L
Sbjct: 178 HHPESLHMFSFLFDDVGIPLNYRHMEGFGVNTYTL 212
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2
Query: 203 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 325
F TT SGAPV + TVG+ GP LL+D + +++++ FDR
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDR 56
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 603 LDLL*RKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLH 478
+D+L K + QL H Q + LQQ+ H+Q Q ++ LH
Sbjct: 376 IDMLIAKIAHLQQLQQQGHSQQQQLQQSTISHQQAQSLNQLH 417
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 29.1 bits (62), Expect = 5.0
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +3
Query: 348 VHAKGAGAFGYFEVTHDITKYSAAKV-FESIGKRTPIAVRFSTVGGESGSADTVRDPRGF 524
V K AG FGY + + + KV + G V T+ G DT+ +
Sbjct: 751 VSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-----VVLLETLAGRPNYDDTLEED--- 802
Query: 525 AVKFYTDDGVWDLVGNNTPIFFIRDPTL 608
K Y + W+L NN P+ + DP L
Sbjct: 803 --KIYIFEWAWELYENNNPLGIV-DPNL 827
>04_04_1157 - 31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 28.7 bits (61), Expect = 6.6
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +3
Query: 348 VHAKGAGAFGYFEVTHDITKYSAAKV-FESIGKRTPIAVRFSTVGGESGSADTVRDPRGF 524
V K AG FGY + + + KV + G V T+ G DT+ +
Sbjct: 787 VSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-----VVLLETLAGRPNYDDTLEED--- 838
Query: 525 AVKFYTDDGVWDLVGNNTPIFFIRDPTL 608
K Y + W+L NN P+ + DP L
Sbjct: 839 --KIYIFEWAWELYENNNPLGLV-DPKL 863
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 300 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 190
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 576 YYFQLNPTLHHQYRTLQQNLEGHEQYQQIHS 484
Y++ +PTL H+YR + +L +EQ QQ+ S
Sbjct: 363 YFYDDDPTLEHRYRRCRPDL--YEQDQQVVS 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,200,081
Number of Sequences: 37544
Number of extensions: 461746
Number of successful extensions: 1055
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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