Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A12
         (1062 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   4.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   9.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   9.1  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 119 LLXMRERSSFYASWLRREVSDHQPIFKVSPT 211
           +L   E  SFY+ W R  + D Q  +K   T
Sbjct: 281 VLGFNEICSFYSDWTRVWLDDAQVPYKYDGT 311


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 99  GVVIPLHSLXCVNAQVSMPPGYAEKYPITSQFSRSVRHPRDIH 227
           G+V+P  S    +  VS+   Y  + P+T   +  V+ P   H
Sbjct: 698 GMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPH 740


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 99  GVVIPLHSLXCVNAQVSMPPGYAEKYPITSQFSRSVRHPRDIH 227
           G+V+P  S    +  VS+   Y  + P+T   +  V+ P   H
Sbjct: 590 GMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPH 632


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,578
Number of Sequences: 336
Number of extensions: 3697
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 30413615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)