Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_A12
(1062 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 32 0.89
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 31 2.0
08_02_0725 - 20442988-20443180,20443268-20443540,20443642-204438... 30 2.7
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 30 3.6
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 29 4.7
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 6.2
12_02_0299 - 17051570-17052474,17053542-17053755 29 8.3
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 8.3
06_03_0395 - 20354713-20355570 29 8.3
03_05_0576 + 25765137-25766420 29 8.3
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 29 8.3
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.9 bits (69), Expect = 0.89
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 829 HRXPXXHXXXPXXXPSPXPXPXPXPPPXXXXXXP 930
HR P P P P P P P PPP P
Sbjct: 139 HRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKP 172
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 143 SFYASWLRREVSDHQPIFKVSPTPSRYSRLCHLGQGNGGREGLRD 277
SF S+L +E++ + +PS Y+R LG GNGG + + D
Sbjct: 708 SFARSYLVQELNIAETRLVPLNSPSDYARALELGSGNGGVDAIID 752
>08_02_0725 -
20442988-20443180,20443268-20443540,20443642-20443853,
20443935-20444247,20444334-20444441,20444537-20444643,
20444743-20444781
Length = 414
Score = 30.3 bits (65), Expect = 2.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 317 TTFTKKSLVALSQSPEDLPSPHFPVPSDKVV 225
TTF +++ A S +PE+LP P + D+VV
Sbjct: 233 TTFRRRTTAAASPAPEELPLPRKILDHDRVV 263
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 29.9 bits (64), Expect = 3.6
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +1
Query: 832 RXPXXHXXXPXXXPSPXPXPXPXPPPXXXXXXP 930
R H P P+P P P P PPP P
Sbjct: 39 RLTRTHQRGPSQNPNPNPNPNPKPPPPPPPQEP 71
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 29.5 bits (63), Expect = 4.7
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 838 PXXHXXXPXXXPSPXPXPXPXPPPXXXXXXP 930
P P PSP P P P PPP P
Sbjct: 32 PFRRPSPPPPPPSPVPSPAPPPPPHRPSPSP 62
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 829 HRXPXXHXXXPXXXPSPXPXPXPXPP 906
HR H P P P P P P PP
Sbjct: 47 HRRRHRHSKKPKPQPQPQPPPPPLPP 72
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.7 bits (61), Expect = 8.3
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 859 PXXXPSPXPXPXPXPPPXXXXXXP 930
P PSP P P P PPP P
Sbjct: 314 PSFYPSPPPPPPPPPPPPPSFPWP 337
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 8.3
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 155 SWLRREVSDHQP-IFKVSPTPSRYSRLCHLGQGNGGREGLRDFGRERP 295
SWL REV H P F + P P S+ GQ N +E + F P
Sbjct: 94 SWLWREVLKHNPDAFTIKPRPLPPSQDPLEGQENQNQEHEKHFAHVAP 141
>06_03_0395 - 20354713-20355570
Length = 285
Score = 28.7 bits (61), Expect = 8.3
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 859 PXXXPSPXPXPXPXPPPXXXXXXP 930
P PSP P P P PPP P
Sbjct: 235 PLPTPSPSPPPCPSPPPAATLPDP 258
>03_05_0576 + 25765137-25766420
Length = 427
Score = 28.7 bits (61), Expect = 8.3
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 859 PXXXPSPXPXPXPXPPPXXXXXXP 930
P PSP P P P PPP P
Sbjct: 65 PEAPPSPSPSPSPSPPPQPSSPPP 88
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 28.7 bits (61), Expect = 8.3
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 832 RXPXXHXXXPXXXPSPXPXPXPXPPPXXXXXXP 930
R P P P P P P P PPP P
Sbjct: 30 RCPFTFLCPPPPPPPPPPPPPPPPPPPLEVVSP 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,392,012
Number of Sequences: 37544
Number of extensions: 503178
Number of successful extensions: 3313
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2975
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3152842920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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