Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A11
         (1018 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    30   3.0  
AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical ...    30   3.0  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
 Frame = +3

Query: 618 PSXPXXXRGGGNXXXGXXPXKXXPPPPLIXXXP--PPXXDXXXXXLQPRXXXGPXXXXPP 791
           P  P   R GG+      P +    PP     P  PP          PR    P    PP
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPP 184

Query: 792 XSPXGP 809
            +P  P
Sbjct: 185 RTPPSP 190


>AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.9 protein.
          Length = 315

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 721 GGGXXXIXGGGGXXXSGXXPXKXFPPPRXXXGXEG 617
           GGG   + GGGG   SG    + FPPP    G  G
Sbjct: 189 GGGGGGMGGGGGSGGSGGGSGR-FPPPPPPYGGGG 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,677,312
Number of Sequences: 27780
Number of extensions: 157322
Number of successful extensions: 394
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2678332928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)