Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A10
         (971 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.11 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.99 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   1.3  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   5.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.0  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   7.0  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 28/82 (34%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
 Frame = -1

Query: 908 GGXWGKXGXFXGGNPP---------EFXGEXXXXRXXGGGGNRXAPXRXGPXGXGXSXXG 756
           GG +G  G   GG PP          F GE       GG G        GP G G    G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG-GGPG 245

Query: 755 GKGEGXAQKRXXGXXXGGVGGG 690
           G G G       G   GG GGG
Sbjct: 246 GFGGGLG---GFGGGPGGFGGG 264



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 24/90 (26%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
 Frame = -1

Query: 896 GKXGXFXGGNPPEFXGEXXXXRXXGGGGNRXAPXRXGPXGXGXSXXGGKGEGXAQKRXXG 717
           G  G   GG      G     R   GGG        G    G    GG G    +    G
Sbjct: 162 GLGGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHG 221

Query: 716 XXXG-GVGGGXXXGXXRXXPXTPXGXGGXI 630
              G G G G   G        P G GG +
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 814 PPPPXXRXXXXSPXNSGGLPPXXXPFXPHXPPP 912
           PPP        SP ++  LP    P  P  PPP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +1

Query: 820 PPXXRXXXXSPXNSGGLPPXXXPFXPHXPPPNXPXNPXKXXP 945
           PP       SP ++  +P    P     PPP  P  P K  P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
 Frame = +1

Query: 814 PPPPXXRXXXXS--PXNSGGLPPXXXPFXPHXPPPNXPXNPXKXXPFXXPXXP 966
           PP P       S  P     LPP   P  P   PP+ P  P    P      P
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -1

Query: 965 GXXGXXKGXXFXGLXGXFGGGX-WGKXGXFXGGNPPEFXG 849
           G  G  +G    G  G FGGG   G  G F GG+   F G
Sbjct: 153 GFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -1

Query: 818 GGNRXAPXRXGPXGXGXSXXGGKGEGXAQKRXXGXXXGGVGGGXXXG 678
           G  +    R GP G G       G G ++    G   GG GGG   G
Sbjct: 123 GPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGG 169


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
 Frame = -1

Query: 908 GGXWGKXGXFXGGNPPEFXGEXXXXRXXGGGGNRXA-PXRXGPXGXGXSXXGGKG 747
           GG  G  G F GG    F G     R  G GG R     R G  G      GG+G
Sbjct: 12  GGSRGGRGGFNGGR-GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = +1

Query: 814  PPPPXXRXXXXSPXNSGG-LPPXXXPFXPHXPPPNXPXNP 930
            PPPP        P  SG  +PP   P  P+   P  P +P
Sbjct: 926  PPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSP 965


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 25/113 (22%), Positives = 30/113 (26%), Gaps = 3/113 (2%)
 Frame = +1

Query: 637 PPLPXGVXGXXLXXP---HXXPPPTPPXXXPXXLFWAXXXXXXXXXDXPXPXGPXRLGAX 807
           PP P       +  P      PPP PP   P                 P P  P  +   
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP-PAPPPAIPGR 398

Query: 808 RFPPPPXXRXXXXSPXNSGGLPPXXXPFXPHXPPPNXPXNPXKXXPFXXPXXP 966
             P  P       +       PP   P  P   PP+ P +     P   P  P
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/53 (26%), Positives = 15/53 (28%)
 Frame = +2

Query: 695 PPPPXXKXRXXXXXXXXXXXXXQXTXPXPXXPXXXXXPGFPPPPXXGXXGXPP 853
           PPPP    R               + P P  P      G  P P  G    PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -2

Query: 259 VNAMIFIHNFHWINAGGDFAIGTVPAVFLRVDSYNRKHSDQCKSDRKFHDFYS 101
           V+ ++ I NFHW  +     I  V  +  ++D Y R +  + +S  + H  Y+
Sbjct: 388 VDVLLAIMNFHWDESNELTPIVAVDNMLQKLDKYERLYPSR-RSILQEHSLYA 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,055
Number of Sequences: 5004
Number of extensions: 42891
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)