Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_A09
(968 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.086
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 31 1.4
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035) 29 7.5
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 7.5
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 29 7.5
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 7.5
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4) 28 9.9
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 35.1 bits (77), Expect = 0.086
Identities = 21/75 (28%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Frame = +2
Query: 686 PPFYVPPFXRGRXGXXXXPPNXKXPXPPPXKPXXSLFWXXXPXF-SPPHXXPXXPAPXRX 862
PP Y PP PP P PP P + + P +PP P P P
Sbjct: 158 PPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNA 217
Query: 863 GXXGXPXPPQRXGTP 907
P PP P
Sbjct: 218 PNPPYPPPPNAPNPP 232
Score = 33.9 bits (74), Expect = 0.20
Identities = 20/67 (29%), Positives = 23/67 (34%)
Frame = +2
Query: 689 PFYVPPFXRGRXGXXXXPPNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXGX 868
P+ PP+ PPN P PPP P P + PP P P P
Sbjct: 173 PYPPPPYPPPPNPPYPPPPNPPYP-PPPNAPNPP---PPNPPYPPPPNAPNPPYPPPPNA 228
Query: 869 XGXPXPP 889
P PP
Sbjct: 229 PNPPYPP 235
Score = 29.9 bits (64), Expect = 3.2
Identities = 23/89 (25%), Positives = 26/89 (29%)
Frame = +2
Query: 623 PXXXXXPFITPX*XXLXXTXXPPFYVPPFXRGRXGXXXXPPNXKXPXPPPXKPXXSLFWX 802
P P+ P PP+ PP PP+ P PPP P
Sbjct: 109 PPPPNPPYPPPPNAPYPPPPNPPYPPPP-------NAPYPPSPNAPYPPPPNPPYPPPLY 161
Query: 803 XXPXFSPPHXXPXXPAPXRXGXXGXPXPP 889
P PP P P P P PP
Sbjct: 162 PPPPNPPPPNAPYPPPPY-PPPPNPPYPP 189
Score = 29.9 bits (64), Expect = 3.2
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = +2
Query: 686 PPFYVPPFXRGRXGXXXXPPNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAP 853
PP PP+ PPN P PPP P P + PP P P P
Sbjct: 180 PPPPNPPYPPPPNPPYPPPPNAPNP-PPPNPPYPPPPNAPNPPYPPPPNAPNPPYP 234
Score = 29.5 bits (63), Expect = 4.3
Identities = 19/68 (27%), Positives = 23/68 (33%)
Frame = +2
Query: 686 PPFYVPPFXRGRXGXXXXPPNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXG 865
PP+ PP+ PP PPP P P + PP P P+P
Sbjct: 92 PPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPP---PPNPPYPPPPNAPYPPSP-NAP 147
Query: 866 XXGXPXPP 889
P PP
Sbjct: 148 YPPPPNPP 155
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 31.1 bits (67), Expect = 1.4
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +2
Query: 740 PPNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXGXXGXPXPP 889
PP P PPP P S P PP P P P P PP
Sbjct: 372 PPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPP 421
Score = 29.1 bits (62), Expect = 5.7
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = +2
Query: 725 GXXXXPPNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXGXXGXPXPP 889
G PP P PPP P P PP P P P P PP
Sbjct: 360 GINMSPPPPPPPPPPPPSPPPPP--PPPPPSPPPPPQPPPPPPPPPPPPPPPPPP 412
>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
Length = 2440
Score = 28.7 bits (61), Expect = 7.5
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 165 KRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKK 284
KRDAP DN S KK L +E+ +P + K
Sbjct: 780 KRDAPLRDNDEQFRTYSRKKQHASLESSIEAPCSPRSASK 819
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 28.7 bits (61), Expect = 7.5
Identities = 18/63 (28%), Positives = 18/63 (28%)
Frame = +2
Query: 701 PPFXRGRXGXXXXPPNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXGXXGXP 880
PP R PP PPP P S P P AP G P
Sbjct: 305 PPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPP 364
Query: 881 XPP 889
PP
Sbjct: 365 PPP 367
Score = 28.3 bits (60), Expect = 9.9
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +1
Query: 736 PPPXXKXXXPPXXETXXFPFLXXXPXXLPPPXXPXXPGXXPAWXXRXSXPXPTG 897
PPP PP P P PPP P G P+ P P G
Sbjct: 346 PPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGRPPSSLGNPPPPPPPG 399
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 28.7 bits (61), Expect = 7.5
Identities = 20/66 (30%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Frame = +2
Query: 698 VPPFXRGRXGXXXXPP--NXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXGXX 871
VP G PP + P PPP P P +PP P P P G
Sbjct: 280 VPDIVTGGGAPVPPPPPADGSAPAPPPPPP---------PGGAPPPPPPPPPPPPGDGGA 330
Query: 872 GXPXPP 889
P PP
Sbjct: 331 PPPPPP 336
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 28.7 bits (61), Expect = 7.5
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -3
Query: 852 GAGXXGXXWGGEXXGXXXQKREXXGFXGGGXGXFXXGG 739
G G G GG G + G+ GGG G + GG
Sbjct: 143 GGGYRGGYRGGYRGGYRGGRDRGGGYGGGGEGGYGMGG 180
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.7 bits (61), Expect = 7.5
Identities = 16/55 (29%), Positives = 18/55 (32%)
Frame = +2
Query: 743 PNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXGXXGXPXPPQRXGTP 907
P + P PPP +P P S P P P P PP R P
Sbjct: 1057 PPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPPRQPDPIPTNPAHPTEPPPRQPKP 1111
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 28.7 bits (61), Expect = 7.5
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +2
Query: 740 PPNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXGXXGXPXPPQ 892
P P PPP +P P PP P P+P R P PP+
Sbjct: 198 PSQITQPPPPPPRP---------PPSPPPPPPPPSPSPPRPPPPPPPSPPR 239
>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
Length = 721
Score = 28.3 bits (60), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 165 KRDAPKEDNSLNTLAESAKKTIEELREKVE 254
KR APK+ N+ + L +K EELR++ +
Sbjct: 62 KRQAPKDRNTASVLRAKIRKQEEELRKETQ 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,331,730
Number of Sequences: 59808
Number of extensions: 375518
Number of successful extensions: 1215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2860128240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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