Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A08
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.18 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.24 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.42 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.3  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    28   1.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   6.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 882 PPXPPPXXPPXXXXPXPPPP 941
           PP PPP   P    P PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 29.5 bits (63), Expect = 0.73
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 882 PPXPPPXXPPXXXXPXPPPPXP 947
           PP PPP  PP    P  PPP P
Sbjct: 9   PPPPPP--PPGFEPPSQPPPPP 28



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 861 PXXXXXXPPXPPPXXPPXXXXPXPPP 938
           P      PP PP   PP    P PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +3

Query: 882 PPXPPPXXPPXXXXP--XPPPPXP 947
           P  PPP  PP    P   PPPP P
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 849 VPXXPXXXXXXPPXPPPXXPPXXXXPXPPPPXP 947
           VP         PP PPP        P PPPP P
Sbjct: 751 VPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.9 bits (64), Expect = 0.55
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 849 VPXXPXXXXXXPPXPPPXXPPXXXXPXPPPPXP 947
           +P  P       P PPP  PP      PPPP P
Sbjct: 749 IPVPPPAPIMGGPPPPP-PPPGVAGAGPPPPPP 780



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
 Frame = +3

Query: 852 PXXPXXXXXXP-PXPPPXXPPXXXXPXPPPPXP 947
           P  P      P P P P  PP      PPPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 885 PXPPPXXPPXXXXPXPPPPXP 947
           P P P   P    P PPPP P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 883 PPXPLXPXPXXXXPPPPXPXXP 948
           PP P  P      PPPP P  P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +2

Query: 827  SVXXPXVSSXXXXXXXXXXPPPPSXPP-PXXXXPXPPXPXP 946
            S   P +S+          PPPPS PP P      PP P P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -1

Query: 955 GXXGXGGGGXGXXXXGGXXGGGXGGXXXXXXGXXG 851
           G  G GGG  G     G  GGG GG      G  G
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGG 256



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -1

Query: 955 GXXGXGGGGXGXXXXGGXXGGGXGGXXXXXXGXXG 851
           G  G GGG  G     G  GGG GG      G  G
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -2

Query: 309 GRF*IXXPIXF-RSFPKQPESNTDFRSIQ---FPNWTTD 205
           G+F +  P+   RSFP +P S TD  S+Q    PN +T+
Sbjct: 514 GKFNVNAPVFTPRSFPTKPFSATDISSVQPTNLPNGSTN 552


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
 Frame = +3

Query: 849  VPXXPXXXXXXPPXPPPXXPPXXXXP---XPPPPXP 947
            +P  P      PP PPP   P    P    PP P P
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
 Frame = +3

Query: 852  PXXPXXXXXXPPXPPPXXPPXXXXP---XPPPPXP 947
            P  P      PP PPP   P    P    PP P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 852  PXXPXXXXXXPPXPPPXXPPXXXXPXPPPPXP 947
            P  P      PP P P   P    P   PP P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVP 1053


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 6.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 884 PPPPSXPPP 910
           PPPP  PPP
Sbjct: 189 PPPPPPPPP 197



 Score = 21.4 bits (43), Expect(2) = 6.1
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +2

Query: 887 PPPSXPPPXXXXPXPPXPXP 946
           PP   P      P PP P P
Sbjct: 224 PPTYTPKQADPLPAPPPPPP 243


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 884 PPPPSXPPPXXXXPXPP 934
           PPPP  P P    P PP
Sbjct: 6   PPPPPAPAPAAAAPAPP 22


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = +3

Query: 849 VPXXPXXXXXXPPXPPPXXPPXXXXPXP-PPPXP 947
           VP  P      PP  PP  PP      P  PP P
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,394
Number of Sequences: 5004
Number of extensions: 36373
Number of successful extensions: 296
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)