Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_A05
(1023 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.65
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 32 0.86
SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29) 32 0.86
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 31 1.1
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 31 1.1
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_11420| Best HMM Match : MBOAT (HMM E-Value=6.9e-06) 31 1.1
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06) 31 1.5
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 31 2.0
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 31 2.0
SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6) 31 2.0
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 31 2.0
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.0
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 31 2.0
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 31 2.0
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 30 2.6
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 30 2.6
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 30 2.6
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.5
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.5
SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9) 30 3.5
SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.5
SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22) 30 3.5
SB_43660| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.5
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.5
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024) 29 4.6
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 29 4.6
SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3) 29 4.6
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 29 6.0
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 6.0
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033) 29 8.0
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 29 8.0
SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26) 29 8.0
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
>SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 32.3 bits (70), Expect = 0.65
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 166 TLTQETATNLLTTART--SLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSLV 336
T+T TN TT T + I+ TTT+ T T ++TT+ T T +T+++ +++
Sbjct: 8 TVTTTIITNATTTIITLSTTIITTTTTITTTTTTITTTITPTITTTTTIITTTITTTII 66
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 31.9 bits (69), Expect = 0.86
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +1
Query: 127 LWPTLKTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKAD 306
L+PT P R + T T T L T RT LP T + T + + T TLP D
Sbjct: 139 LYPTQSAPYRLYPTQTVRTIQTLPNTVRTIQTLPSTDSAHRT-DHPTQTESTVQTLPSTD 197
>SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
Length = 447
Score = 31.9 bits (69), Expect = 0.86
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +3
Query: 165 NADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPG 335
NA NG P + P+ PP Y P NG +P+ Y+ P G+P + PF G
Sbjct: 309 NAPPFNGQPPYNTPPFNGQPPY-YTPPFNG-QPL----YHTPPFNGQPPYNTPPFNG 359
Score = 29.1 bits (62), Expect = 6.0
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = +3
Query: 183 GYEPIDNRPYIVNPPKDYN-PNGNGYEPID----NG--AYYVDPPQGRPYFKPTPFPG 335
G P + P+ PP YN P NG P + NG YY P G+P + PF G
Sbjct: 293 GQPPYNAPPFTGQPP--YNAPPFNGQPPYNTPPFNGQPPYYTPPFNGQPLYHTPPFNG 348
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 31.5 bits (68), Expect = 1.1
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 915 PRXRRXGGGXXXGFGGGGG 859
PR RR GGG G GGGGG
Sbjct: 509 PRRRRGGGGGGGGGGGGGG 527
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 31.5 bits (68), Expect = 1.1
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 915 PRXRRXGGGXXXGFGGGGG 859
PR RR GGG G GGGGG
Sbjct: 998 PRRRRGGGGGGGGGGGGGG 1016
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 31.5 bits (68), Expect = 1.1
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 166 TLTQETATNLLTTARTSLILPKTTTL-METATNLSTTVHITWTLPKADLTSSLPLSLVLA 342
T + T +L TTA + P+TTT + T +TT + T P+A T+SL + LA
Sbjct: 561 TAPEATTASLATTAPEATTAPETTTALLVTTAPETTTASLVTTAPEA-TTASLATTASLA 619
Query: 343 VGSKE 357
+ E
Sbjct: 620 TTAPE 624
Score = 29.9 bits (64), Expect = 3.5
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 166 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSL 321
T + T +L+TTA + P+TTT E T TT T T+SL
Sbjct: 134 TAPEATTASLVTTAPEATTAPETTTAPEATTAPETTTASLVTTAPETTTASL 185
Score = 29.5 bits (63), Expect = 4.6
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 166 TLTQETATNLLTTARTSLILPKTTTL-METATNLSTTVHITWTLPKADLTSSLPLSLVLA 342
T + T +L TTA + P+TTT + T +TT + T P+A T+SL + A
Sbjct: 519 TAPETTTASLATTAPETTTAPETTTASLATTAPETTTASLVTTAPEA-TTASLATTAPEA 577
Query: 343 VGSKEYLXKLI 375
+ E L+
Sbjct: 578 TTAPETTTALL 588
>SB_11420| Best HMM Match : MBOAT (HMM E-Value=6.9e-06)
Length = 628
Score = 31.5 bits (68), Expect = 1.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 860 PPPPPKPXXXPPPXLLXR 913
PPPPP P PPP +L R
Sbjct: 211 PPPPPPPPPPPPPPMLAR 228
Score = 31.5 bits (68), Expect = 1.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 860 PPPPPKPXXXPPPXLLXRGXXP 925
PPPPP P PPP L R P
Sbjct: 212 PPPPPPPPPPPPPMLARRWYYP 233
>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
Length = 587
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 160 WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWT 291
+ T+ T T TT T+ I TTT T TN +TTV+ T T
Sbjct: 538 YTTIVTITITTNYTTTVTTTITNYTTTFTITITNYTTTVNTTIT 581
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 199 TTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSS 318
T A + + PKTTT +ET TTV + T P + TS+
Sbjct: 229 TDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTSA 267
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 30.7 bits (66), Expect = 2.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 860 PPPPPKPXXXPPPXLLXRGXXP 925
PPPPP P PPP RG P
Sbjct: 196 PPPPPGPGGIPPPPPPIRGGVP 217
>SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)
Length = 127
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 160 WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHIT 285
W T T T T TT T+ TTT +T T +TT IT
Sbjct: 53 WTTTTTSTITT--TTTTTTTTKTTTTTTTKTTTTTATTTEIT 92
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = -2
Query: 1019 GXXXGXGVXGXXGERXGXWXXXGXXRGXXKXXXVGPXGGGXGGG 888
G G G G G R G G RG G GGG GGG
Sbjct: 141 GYRSGGGYRGGGGYRGGGGGYRGRGRGGGGYGGGGYGGGGYGGG 184
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.7 bits (66), Expect = 2.0
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +3
Query: 186 YEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY--YVDPPQGRPYFKPTPFP 332
Y P N PY P Y P N Y P N Y +PP P + P P P
Sbjct: 116 YPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNP 167
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 199 TTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSS 318
T A + + PKTTT +ET TTV + T P + TS+
Sbjct: 2291 TDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTSA 2329
Score = 30.3 bits (65), Expect = 2.6
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 172 TQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSS 318
++ T T A + + PKTTT +ET TTV + T P + TS+
Sbjct: 767 SETTVAPETTDAPATTLAPKTTTALETTVAAKTTV-VPETTPALETTSA 814
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 30.7 bits (66), Expect = 2.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 860 PPPPPKPXXXPPPXLLXRGXXP 925
PPPPP P PPP +L P
Sbjct: 196 PPPPPPPPPPPPPPILELAAPP 217
Score = 29.9 bits (64), Expect = 3.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 860 PPPPPKPXXXPPPXLLXRGXXPXXS 934
PPPPP P PPP L P S
Sbjct: 197 PPPPPPPPPPPPPILELAAPPPPGS 221
Score = 28.7 bits (61), Expect = 8.0
Identities = 17/67 (25%), Positives = 19/67 (28%)
Frame = +3
Query: 807 PPATAXXPXXXSSXXXXXXXXXQNXXXPPPXXSSXGAXXPPFXXPAXXXXXXPXPAPLAX 986
PP P S PPP + PP A P P P+A
Sbjct: 113 PPRAPETPSQAPSPPPPPTSPATRAPPPPPPIAPATGGPPPPPPIAPATGGPPPPPPIAP 172
Query: 987 TXTYPXP 1007
T P P
Sbjct: 173 AATVPAP 179
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 30.3 bits (65), Expect = 2.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 857 SPPPPPKPXXXPPPXLLXRG 916
+PPPPP P PPP L G
Sbjct: 210 APPPPPPPFGAPPPPALNGG 229
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 30.3 bits (65), Expect = 2.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 857 SPPPPPKPXXXPPP 898
SPPPPP+P PPP
Sbjct: 388 SPPPPPQPPPPPPP 401
Score = 29.5 bits (63), Expect = 4.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 857 SPPPPPKPXXXPPPXL 904
+PPPPP P PPP L
Sbjct: 419 APPPPPPPPPPPPPAL 434
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 30.3 bits (65), Expect = 2.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 142 KTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTT 273
K P+ KT TAT T A + + P+TT + ET L TT
Sbjct: 1682 KAPVDQLKTKQPTTATAKTTAAPETTVAPETTVVPETTPALETT 1725
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.9 bits (64), Expect = 3.5
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +3
Query: 888 PPPXXSSXGAXXPPFXXPAXXXXXXPXPAPLAXTXTYPXPXP 1013
PPP ++ A PP PA P PAP P P P
Sbjct: 65 PPPPAAAPAAPPPPAAPPAAPPPPPPLPAP-PPPPAQPAPQP 105
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 29.9 bits (64), Expect = 3.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 860 PPPPPKPXXXPPPXLLXRGXXP 925
PPPPP P PPP G P
Sbjct: 872 PPPPPPPPPPPPPPASSTGSTP 893
>SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9)
Length = 678
Score = 29.9 bits (64), Expect = 3.5
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 181 TATNLLTTART-SLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAV 345
T +L+T T L++ T L+ T + V IT TLP +T+ LPL ++ +
Sbjct: 278 TILHLVTITTTLPLVVITTILLLVVITTILPLVAITTTLPLVAITTILPLVVITTI 333
>SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.9 bits (64), Expect = 3.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 166 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTT 273
T+T TAT TT T+ TTT T T +TT
Sbjct: 28 TITTATATTTTTTTTTTTTTTTTTTTTTTTTTTTTT 63
Score = 28.7 bits (61), Expect = 8.0
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +1
Query: 166 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 315
T T T T TTA + TTT T T +TT T T T+
Sbjct: 14 TTTTTTTTTAATTATITTATATTTTTTTTTTTTTTTTTTTTTTTTTTTTT 63
>SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22)
Length = 266
Score = 29.9 bits (64), Expect = 3.5
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +1
Query: 187 TNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAV 345
TN++TT+ T++I T T+ T T ++ T+ IT T+ +T ++ +++ + +
Sbjct: 168 TNIITTSNTNIITTTTITITITIT-ITITITITITI-TITITITITITITITI 218
>SB_43660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 29.9 bits (64), Expect = 3.5
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +1
Query: 139 LKTPLR*WKTLTQETAT-NLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 315
L TP+ T+T T T +TT T++ + TTT+ T T TT T T D
Sbjct: 12 LGTPITTITTITVTTITVTTITTTITTITITTTTTITITITITITTTITTITTTTGDPLE 71
Query: 316 SL--PLSLVLAV 345
S SL LAV
Sbjct: 72 STCRHASLALAV 83
>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 29.9 bits (64), Expect = 3.5
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 163 KTLTQETATNLLTTARTSLILPKTTTLMETA-TNLSTTVHITWTLPKADLTSSLPLSLVL 339
+T +TAT+ T TS +L +T L+ T T+ +T+ H+T LTS+ ++ V+
Sbjct: 432 RTTVTDTATS--TAVVTSTVLVASTRLLSTVKTHTATSTHVTTATSTDTLTSTAIVTSVM 489
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 29.5 bits (63), Expect = 4.6
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 169 LTQETATNLLTTARTSLILPKTTTLMETATNLSTTVH---ITWTLPKADLTSSLPL 327
+T T ++TT T+ I+ T T T T ++TTV IT T+ +T++ P+
Sbjct: 1080 ITTTITTTIITTTITTTIITTTITTTITTTIITTTVTTTIITTTITTTIITTTDPI 1135
>SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)
Length = 249
Score = 29.5 bits (63), Expect = 4.6
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 136 TLKTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 315
T T + T T +T + TT T+ I TTT+ TA +STT T T +T+
Sbjct: 94 TTTTTITTTTTTTTTISTTISTTTTTTTISTTTTTI--TAVIISTTTTTTSTANTTTITA 151
Query: 316 SL 321
++
Sbjct: 152 TI 153
Score = 29.5 bits (63), Expect = 4.6
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 166 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLA 342
T T TA +++T T+ TTT+ T T +TT+ IT T+ T + ++ ++
Sbjct: 125 TTTTITAV-IISTTTTTTSTANTTTITATITTTTTTITITATITTITTTITATITTTIS 182
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 29.5 bits (63), Expect = 4.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 857 SPPPPPKPXXXPPP 898
SPPPPP P PPP
Sbjct: 1310 SPPPPPPPPPPPPP 1323
Score = 29.1 bits (62), Expect = 6.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 860 PPPPPKPXXXPPPXL 904
PPPPP P PPP L
Sbjct: 1312 PPPPPPPPPPPPPPL 1326
>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
Length = 1165
Score = 29.5 bits (63), Expect = 4.6
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 181 TATNLLTTARTSLILPKTTTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAV 345
T T L T L L TTL+ T + V IT TLP +T++LPL ++ +
Sbjct: 541 TTTLPLVVITTILPLVTITTLLPLVVITTILPLVVITTTLPLVAITTTLPLVIITTI 597
Score = 28.7 bits (61), Expect = 8.0
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 163 KTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVH---ITWTLPKADLTSSLPL 327
+TL + + +L L TT++ T ++TT+H IT TLP +T+ LPL
Sbjct: 499 QTLLNHASKKAILAITNTLPLVVITTILHLVT-ITTTLHLVTITTTLPLVVITTILPL 555
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.5 bits (63), Expect = 4.6
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +2
Query: 857 SPPPPPKPXXXPPPXLLXRGXXPXXSXXRXXXPXSPXT 970
+PPPPP PPP G P P P T
Sbjct: 364 TPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPT 401
Score = 29.1 bits (62), Expect = 6.0
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +2
Query: 860 PPPPPKPXXXPPPXLLXRGXXPXXSXXRXXXPXSPXT 970
PPPPP PPP G P P P T
Sbjct: 375 PPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPPT 411
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 29.1 bits (62), Expect = 6.0
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +1
Query: 166 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADL 309
T T T TTA T+ TTT T T +TT+ I W D+
Sbjct: 526 TATATTTATATTTATTAATATTTTTTTTTNTTTNTTI-IIWIAAVTDV 572
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.1 bits (62), Expect = 6.0
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 145 TPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTT-VHITWTLPK---ADLT 312
TPL + T T A + LPKTT ET T TT T TLPK A T
Sbjct: 2968 TPLPKTTAAPETTPLPKTTAAPETTTLPKTTAAPETTTLPKTTAAPETTTLPKTTAAPET 3027
Query: 313 SSLP 324
++LP
Sbjct: 3028 TTLP 3031
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 29.1 bits (62), Expect = 6.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 860 PPPPPKPXXXPPP 898
PPPPP+P PPP
Sbjct: 205 PPPPPRPPPSPPP 217
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.7 bits (61), Expect = 8.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 860 PPPPPKPXXXPPP 898
PPPPP+P PPP
Sbjct: 697 PPPPPQPSTPPPP 709
>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 28.7 bits (61), Expect = 8.0
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +1
Query: 130 WPTLKTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADL 309
+ T KT KT T A +TT T+ TTT T T +TT K
Sbjct: 21 YATTKTTAATIKTKTTIIAITAITTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTKTIT 80
Query: 310 TSSLPLSLVLA 342
+++ ++ +A
Sbjct: 81 ITTVTITTAVA 91
>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 28.7 bits (61), Expect = 8.0
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -2
Query: 311 VRSALGRVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAVS*VSV 165
VR + R VV R S+RVV+ + VR V+ R+VA++ V V
Sbjct: 772 VRVVMRRYVTSVRVVMRRYVASVRVVMPRYVASVRVVMRRYVAIASVRV 820
Score = 28.7 bits (61), Expect = 8.0
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -2
Query: 311 VRSALGR-VHVICTVVDRFVAV-SIRVVVFGRINDVRAVVNRFVAVS*VSVFHYLNGV 144
VR + R V + V+ R+VA+ S+RVV+ + VR V+ R+VA V + Y+ V
Sbjct: 794 VRVVMPRYVASVRVVMRRYVAIASVRVVMRRYVASVRVVMRRYVASVRVVMRRYVTSV 851
>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
Length = 382
Score = 28.7 bits (61), Expect = 8.0
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +1
Query: 130 WPTLKTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADL 309
+ T KT KT T A +TT T+ TTT T T +TT K
Sbjct: 143 YATTKTTAATIKTKTTIIAITAITTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTKTIT 202
Query: 310 TSSLPLSLVLA 342
+++ ++ +A
Sbjct: 203 ITTVTITTAVA 213
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.7 bits (61), Expect = 8.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 184 ATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 315
AT +TT ++ P TT TAT +TT T T P A T+
Sbjct: 96 ATATITTYTATVTAPNATTTTPTATTTTTTT-TTTTTPYATTTT 138
Score = 28.7 bits (61), Expect = 8.0
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = +1
Query: 166 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 315
T T TAT TT T+ TTT T T TT + T T P A T+
Sbjct: 113 TTTTPTATTTTTTTTTTTTPYATTTTPNTTT---TTPNTTTTSPNATTTT 159
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 28.7 bits (61), Expect = 8.0
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +1
Query: 166 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLS 330
++ + TATN TA +PKTTT ET TTV T D S+ +S
Sbjct: 352 SVPETTATN---TAPDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTIS 403
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.7 bits (61), Expect = 8.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 860 PPPPPKPXXXPPPXLL 907
PPPPP P PPP L
Sbjct: 108 PPPPPPPPPPPPPITL 123
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1
Query: 912 RXRRXGGGXXXGFGGGGG 859
R RR GGG G GGGGG
Sbjct: 159 RNRRRGGGGGGGGGGGGG 176
>SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)
Length = 1410
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +2
Query: 800 PXTPRXRXXAXAXLLXXXXSPPPPPKPXXXPPP 898
P TP+ PPPPP P PPP
Sbjct: 340 PTTPQPPTPTTPKTHPQLGPPPPPPPPPPTPPP 372
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 28.7 bits (61), Expect = 8.0
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 386 HYFVINFXRYSLLPTASTRERGRLEVRSALGRVHVICT 273
HY + F R PT S R R R E A RVHV C+
Sbjct: 973 HYLKVGFERLPSPPTNSRRRRLRSE---ADARVHVTCS 1007
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,017,821
Number of Sequences: 59808
Number of extensions: 384309
Number of successful extensions: 3316
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2844
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3047350001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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