Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_A04
(963 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical p... 134 7e-32
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 40 0.002
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 40 0.002
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 31 0.92
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 31 0.92
L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear ... 31 1.6
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 29 4.9
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 29 4.9
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 28 8.6
>Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical
protein Y49E10.15 protein.
Length = 90
Score = 134 bits (325), Expect = 7e-32
Identities = 59/79 (74%), Positives = 73/79 (92%)
Frame = +2
Query: 164 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 343
K+ KVMVQP+NLIFRYLQNR+RVQIWLYE+V R+EG+I+GFDE+MN+V DEAEEV+MK+
Sbjct: 5 KLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKT 64
Query: 344 KNRKQIGRIMMKGDNITLI 400
K R +IGRI++KGDNITLI
Sbjct: 65 KGRNKIGRILLKGDNITLI 83
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +2
Query: 251 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 403
N N R+ G + GFD +MN+V+DEA E + K +G +++G+++ +++
Sbjct: 22 NGNRRVSGILRGFDPFMNMVIDEAVE-YQKDGGSVNLGMTVIRGNSVVIME 71
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +2
Query: 251 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 403
N N R+ G + GFD +MN+V+DEA E + K +G +++G+++ +++
Sbjct: 22 NGNRRVSGILRGFDPFMNMVIDEAVE-YQKDGGSVNLGMTVIRGNSVVIME 71
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +2
Query: 233 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVH--MKSKNRKQIGRIMMKGDNITLI 400
+IW+ + I G + GFD+Y+N+VL++ E K ++ I++ G++IT++
Sbjct: 25 KIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGNHITML 82
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 31.5 bits (68), Expect = 0.92
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 346 KQKTNRKNNDEGRQHNTHTEREPQR 420
K K N +N D+G+QH E++PQ+
Sbjct: 350 KSKRNSQNEDDGQQHQHQNEQQPQQ 374
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 31.5 bits (68), Expect = 0.92
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 346 KQKTNRKNNDEGRQHNTHTEREPQR 420
K K N +N D+G+QH E++PQ+
Sbjct: 350 KSKRNSQNEDDGQQHQHQNEQQPQQ 374
>L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 5 protein.
Length = 85
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 260 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
+ +G +V D YMN+ L AEE ++ ++ +G I+++ +N+ +
Sbjct: 29 MEYKGVLVAVDSYMNLQLAHAEE-YIDGNSQGNLGEILIRCNNVLYV 74
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Frame = +2
Query: 272 GHIVGFDEYMNIVLDEAEEVHMKSKN-------RKQIGRIMMKGDNITLI 400
G + GFD+ +N+VLD+ E +N +Q+G I+ +G IT++
Sbjct: 36 GVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLIVARGTAITVV 85
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 98 FLP*FFIHESQYKQKMAYKGPPKVQKVMVQPINLIFRYLQNRS 226
FLP F I Y+ K PP V+ +N IFRY R+
Sbjct: 431 FLPQFQIF--MYQSKPPTSSPPSGSSAQVEDVNSIFRYSTGRN 471
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 266 IEGHIVGFDEYMNIVLDEAEEVHMKSKN---RKQIGRIMMKGDNITLI 400
I G + GFD+ +N+V+++A E +G +++G+N+ +I
Sbjct: 23 IVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRGENVAII 70
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,928,445
Number of Sequences: 27780
Number of extensions: 295667
Number of successful extensions: 842
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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