Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A04
         (963 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   4.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   5.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.2  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +3

Query: 126 VNTNKKWLIKAHRKFRR*WYSPSTLSSDTYRTGV 227
           +  ++KW++  + K +R W  P   +  T + G+
Sbjct: 29  ITGDEKWVVYNNIKRKRSWSRPRESAQTTSKAGI 62


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +3

Query: 126 VNTNKKWLIKAHRKFRR*WYSPSTLSSDTYRTGV 227
           +  ++KW++  + K +R W  P   +  T + G+
Sbjct: 150 ITGDEKWVVYNNIKRKRSWSRPREPAQTTSKAGI 183


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +1

Query: 301 EYCSRRS*RSPYEIEKQKTNRKNNDEGRQHNTH 399
           E C R S  S        TN  NN+    +N +
Sbjct: 217 ETCQRNSNNSTITAGNANTNASNNNNNNNNNNN 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,297
Number of Sequences: 438
Number of extensions: 4053
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)