Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_A04
(963 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 126 2e-29
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 124 7e-29
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 41 0.001
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 40 0.002
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 39 0.004
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 35 0.070
At2g36650.1 68415.m04495 expressed protein 30 2.6
At2g16640.1 68415.m01910 chloroplast outer membrane protein, put... 29 3.5
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 29 6.1
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 29 6.1
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 28 8.0
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 126 bits (305), Expect = 2e-29
Identities = 55/79 (69%), Positives = 70/79 (88%)
Frame = +2
Query: 164 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 343
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I GFDEYMN+VLDEAEEV +K
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKK 64
Query: 344 KNRKQIGRIMMKGDNITLI 400
K RK +GRI++KGDNITL+
Sbjct: 65 KTRKPLGRILLKGDNITLM 83
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 124 bits (300), Expect = 7e-29
Identities = 54/79 (68%), Positives = 69/79 (87%)
Frame = +2
Query: 164 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 343
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I GFDEYMN+VLDEAEEV +K
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKK 64
Query: 344 KNRKQIGRIMMKGDNITLI 400
RK +GRI++KGDNITL+
Sbjct: 65 NTRKPLGRILLKGDNITLM 83
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/66 (25%), Positives = 41/66 (62%)
Frame = +2
Query: 206 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 385
+Y+ + ++++ N N + G + GFD++MN+V+D EV+ ++ IG ++++G+
Sbjct: 12 KYMDKKLQIKL----NANRMVTGTLRGFDQFMNLVVDNTVEVN--GNDKTDIGMVVIRGN 65
Query: 386 NITLIQ 403
+I ++
Sbjct: 66 SIVTVE 71
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/66 (25%), Positives = 41/66 (62%)
Frame = +2
Query: 206 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 385
+Y+ + ++++ N N + G + GFD++MN+V+D EV+ ++ IG ++++G+
Sbjct: 12 KYMDKKLQIKL----NANRMVVGTLRGFDQFMNLVVDNTVEVN--GDDKTDIGMVVIRGN 65
Query: 386 NITLIQ 403
+I ++
Sbjct: 66 SIVTVE 71
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/58 (27%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +2
Query: 233 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLI 400
+IW+ + + G + GFD Y+N+VL++ E + ++ R+ ++ +I++ G+NI ++
Sbjct: 21 KIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL 78
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 35.1 bits (77), Expect = 0.070
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 251 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQ---IGRIMMKGDNITLI 400
N I G + GFD+ NI+LDE+ E +K Q +G +++GDNI +I
Sbjct: 20 NDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVI 72
>At2g36650.1 68415.m04495 expressed protein
Length = 373
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 251 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKN 349
N+ +EG + + Y++++ +E EE+ MKS N
Sbjct: 210 NIVKELEGKVKDMEAYVDVLQEEKEELFMKSSN 242
>At2g16640.1 68415.m01910 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1206
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 337 EIEKQKTNRKNNDEGRQHNTHTEREPQRVS 426
E+EKQ+++R + D N+H E EP+ VS
Sbjct: 404 ELEKQQSSRVHVDPEITENSHVETEPEVVS 433
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
Frame = +2
Query: 263 RIEGHIVGFDEYMNIVLDEAEEV---H---MKSKNR-KQIGRIMMKGDNITLI 400
++ G + G+D+ +N+VLDEA E H +K+ ++ +++G I+ +G + L+
Sbjct: 28 QVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
Frame = +2
Query: 263 RIEGHIVGFDEYMNIVLDEAEEV---H---MKSKNR-KQIGRIMMKGDNITLI 400
++ G + G+D+ +N+VLDEA E H +K+ ++ +++G I+ +G + L+
Sbjct: 28 QVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 185 QPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEV 331
+P++LI L R+ + L + LR G + FD+++N++L + EEV
Sbjct: 11 EPLDLI--RLSIEERIYVKLRSDRELR--GKLHAFDQHLNMILGDVEEV 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,741
Number of Sequences: 28952
Number of extensions: 267944
Number of successful extensions: 827
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2324382072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -