Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A02
         (912 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.020
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_5925| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  29   5.2  
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          29   6.9  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 28   9.1  

>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 37.1 bits (82), Expect = 0.020
 Identities = 22/61 (36%), Positives = 24/61 (39%)
 Frame = +1

Query: 316 NXPINXGGPCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXG 495
           N P   GG     P P    PPPR   P   PF P        PPP G+ P P  + P  
Sbjct: 457 NLPPPPGGMRGMPPPPMGMYPPPRGFPPP--PFGPPPPFYRGPPPPRGMPPPPRQRMPSQ 514

Query: 496 G 498
           G
Sbjct: 515 G 515


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 18/77 (23%), Positives = 22/77 (28%)
 Frame = +2

Query: 341 PVPXIPYPFXVXXPXVPXSPXXXXFPPAXXPXRVSXPXXGXXXXXXKKXPRGGFPHXXXP 520
           P P  PYP  +  P     P    +PP   P   + P            P    P    P
Sbjct: 150 PPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNP 209

Query: 521 XXXPXXXKXXXXFXPPP 571
              P        + PPP
Sbjct: 210 PYPPPPNAPNPPYPPPP 226


>SB_5925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 376 PPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
           P PRSP PA  P SP     + FP P    P P
Sbjct: 170 PVPRSPFPA--PHSPLPVPRSPFPAPCSPLPVP 200


>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 795

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = +1

Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXGGXSP 507
           S  PLP    PPP  P     P SP        PPP  V   P  + P     P
Sbjct: 695 SSEPLPL---PPPPPPTGIDIPHSPSKDDLPLPPPPEEVSLPPPDESPPSSKHP 745


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = +1

Query: 325 INXGGPCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
           IN   P    P P    PPP  P P   P  P        PPP    P P
Sbjct: 361 INMSPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPP 410



 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = +1

Query: 340 PCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
           P S  P P    PPP  P P   P  P        PPP    P P
Sbjct: 386 PPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPP 430



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +1

Query: 355 PLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
           P P    PPP+ P P   P  P        PPP    P P
Sbjct: 384 PPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPP 423


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = +1

Query: 322 PINXGG-PCSXNPLPF*XXPPPR--SPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
           P   GG P   +PL     PPP+  +P P   P +P        PPP G    P
Sbjct: 211 PQEGGGIPPQNHPLTNYPAPPPQGYAPPPGGYPGAPPAGGYPGAPPPGGYPGGP 264


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
 Frame = +1

Query: 334 GGPCSXNPL-PF*XXPPPRSPXP--AXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXGGXS 504
           GGP    P+ P    PPP  P    A  P      + A  PPP+G  P P    P     
Sbjct: 149 GGPPPPPPIAPATGGPPPPPPIAPAATVPAPAVPLAAASPPPPSGGPPPPPPPPPPPPPP 208

Query: 505 PXL 513
           P L
Sbjct: 209 PIL 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,104,200
Number of Sequences: 59808
Number of extensions: 183152
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)