Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_A02
(912 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X63522-1|CAA45087.1| 533|Homo sapiens retinoic acid X receptor ... 32 2.5
M84820-1|AAA60293.1| 533|Homo sapiens retinoid X receptor beta ... 32 2.5
BT007280-1|AAP35944.1| 533|Homo sapiens retinoid X receptor, be... 32 2.5
BC001167-1|AAH01167.1| 533|Homo sapiens retinoid X receptor, be... 32 2.5
AL844527-9|CAI41836.2| 537|Homo sapiens retinoid X receptor, be... 32 2.5
AL844527-8|CAI41837.1| 533|Homo sapiens retinoid X receptor, be... 32 2.5
AL662824-21|CAI17612.2| 537|Homo sapiens retinoid X receptor, b... 32 2.5
AL662824-20|CAI17614.1| 533|Homo sapiens retinoid X receptor, b... 32 2.5
AL645940-7|CAI18064.2| 537|Homo sapiens retinoid X receptor, be... 32 2.5
AL645940-6|CAI18066.1| 533|Homo sapiens retinoid X receptor, be... 32 2.5
AL031228-14|CAI95622.1| 482|Homo sapiens retinoid X receptor, b... 32 2.5
AL031228-13|CAA20239.1| 533|Homo sapiens retinoid X receptor, b... 32 2.5
AF120161-1|AAD13794.1| 533|Homo sapiens retinoic X receptor bet... 32 2.5
AF065396-1|AAC18599.1| 533|Homo sapiens retinoic X receptor B p... 32 2.5
AB209244-1|BAD92481.1| 577|Homo sapiens retinoid X receptor, be... 32 2.5
AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens ... 32 3.3
X52541-1|CAA36777.1| 543|Homo sapiens protein ( Human mRNA for ... 31 5.8
M62829-1|AAA35815.1| 543|Homo sapiens ETR103 protein. 31 5.8
BC073983-1|AAH73983.1| 543|Homo sapiens early growth response 1... 31 5.8
AJ243425-1|CAB46678.1| 543|Homo sapiens early growth response p... 31 5.8
>X63522-1|CAA45087.1| 533|Homo sapiens retinoic acid X receptor b
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 128
>M84820-1|AAA60293.1| 533|Homo sapiens retinoid X receptor beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPTLGGSGAPPPPPMPPPP 128
>BT007280-1|AAP35944.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 128
>BC001167-1|AAH01167.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 128
>AL844527-9|CAI41836.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 128
>AL844527-8|CAI41837.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 128
>AL662824-21|CAI17612.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 128
>AL662824-20|CAI17614.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 128
>AL645940-7|CAI18064.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 128
>AL645940-6|CAI18066.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 128
>AL031228-14|CAI95622.1| 482|Homo sapiens retinoid X receptor, beta
protein.
Length = 482
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 36 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 77
>AL031228-13|CAA20239.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 128
>AF120161-1|AAD13794.1| 533|Homo sapiens retinoic X receptor beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 128
>AF065396-1|AAC18599.1| 533|Homo sapiens retinoic X receptor B
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 87 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 128
>AB209244-1|BAD92481.1| 577|Homo sapiens retinoid X receptor, beta
variant protein.
Length = 577
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 346 SXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
S NPLP PPP P P P + + PPP + P P
Sbjct: 127 SPNPLPQ-GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP 168
>AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens
cDNA FLJ45135 fis, clone BRAWH3038252, highly similar
to Formin 1 isoform IV. ).
Length = 844
Score = 31.9 bits (69), Expect = 3.3
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = +1
Query: 322 PINXGGPCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
P++ G P P P PPP S P P P + P P G P P
Sbjct: 321 PVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAP 371
>X52541-1|CAA36777.1| 543|Homo sapiens protein ( Human mRNA for
early growth response protein 1 (hEGR1). ).
Length = 543
Score = 31.1 bits (67), Expect = 5.8
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 152 GGFLNPLLPGWLFGRRTLDSGRXTPKKKHXKGPCSET 262
GGF P++P +LF ++ D G TP +K +G S T
Sbjct: 245 GGFQVPMIPDYLFPQQQGDLGLGTPDQKPFQGLESRT 281
>M62829-1|AAA35815.1| 543|Homo sapiens ETR103 protein.
Length = 543
Score = 31.1 bits (67), Expect = 5.8
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 152 GGFLNPLLPGWLFGRRTLDSGRXTPKKKHXKGPCSET 262
GGF P++P +LF ++ D G TP +K +G S T
Sbjct: 245 GGFQVPMIPDYLFPQQQGDLGLGTPDQKPFQGLESRT 281
>BC073983-1|AAH73983.1| 543|Homo sapiens early growth response 1
protein.
Length = 543
Score = 31.1 bits (67), Expect = 5.8
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 152 GGFLNPLLPGWLFGRRTLDSGRXTPKKKHXKGPCSET 262
GGF P++P +LF ++ D G TP +K +G S T
Sbjct: 245 GGFQVPMIPDYLFPQQQGDLGLGTPDQKPFQGLESRT 281
>AJ243425-1|CAB46678.1| 543|Homo sapiens early growth response
protein 1 protein.
Length = 543
Score = 31.1 bits (67), Expect = 5.8
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 152 GGFLNPLLPGWLFGRRTLDSGRXTPKKKHXKGPCSET 262
GGF P++P +LF ++ D G TP +K +G S T
Sbjct: 245 GGFQVPMIPDYLFPQQQGDLGLGTPDQKPFQGLESRT 281
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,472,760
Number of Sequences: 237096
Number of extensions: 1305257
Number of successful extensions: 4568
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4111
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -