Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_A01
(934 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 31 1.3
03_01_0515 - 3864796-3865425 31 1.7
07_01_0080 + 587674-588510 30 2.3
10_08_0745 - 20260136-20260236,20260890-20260937,20261025-202611... 29 4.0
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 29 5.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 5.3
02_02_0210 + 7873962-7874753 29 5.3
02_02_0209 + 7866348-7867139 29 5.3
11_06_0610 - 25449085-25453284 29 7.0
12_02_0299 - 17051570-17052474,17053542-17053755 28 9.2
01_05_0046 + 17544692-17544904,17545185-17545661,17545826-17546041 28 9.2
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = +2
Query: 728 SXXTXPXXPXRAVPSVCHXTXRXXXPPPXXXPPRLPGVFS-XPPXXXXPXPXXXXXXXPP 904
S + P R++P V PPP P +P V S PP P P PP
Sbjct: 29 SSPSQPTTTSRSIPVVLPSAPSSKPPPPTQTAPPVPVVISEPPPPQPQPEPQPAAPSQPP 88
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/66 (25%), Positives = 20/66 (30%)
Frame = +2
Query: 707 PTXNISSSXXTXPXXPXRAVPSVCHXTXRXXXPPPXXXPPRLPGVFSXPPXXXXPXPXXX 886
P +++SS P P PPP PP P PP P P
Sbjct: 53 PPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPV 112
Query: 887 XXXXPP 904
PP
Sbjct: 113 KSSPPP 118
>07_01_0080 + 587674-588510
Length = 278
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = +2
Query: 803 PPPXXXPPRLPGVFSXPPXXXXPXPXXXXXXXPPLXTLRXH 925
PPP PP G PP P P PPL T R H
Sbjct: 91 PPPPPPPPPSSG---SPPPPPPPPPPPPPPPPPPLFTRRSH 128
>10_08_0745 -
20260136-20260236,20260890-20260937,20261025-20261165,
20261358-20261603,20261744-20262583,20263253-20263286
Length = 469
Score = 29.5 bits (63), Expect = 4.0
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = -2
Query: 306 LLKSCASFDLVSELNCCSKVLWNSLVWCSMSLKKSGASRRTIAXLGQSDAG-EENYELGG 130
LL +C+ D + E CC V ++V ++ + GA+ + + SDAG + G
Sbjct: 205 LLDACSDVDPLKE--CCRPVCQPAIVEAAVHISSGGANMFGSSSISGSDAGINVVSDCKG 262
Query: 129 --HDVLXERLSAEEMRT 85
H L +LS+EE T
Sbjct: 263 VVHSWLSMKLSSEESNT 279
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 29.1 bits (62), Expect = 5.3
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 503 EKLQAAVQNTVQESQKLXKKVSSNVXETNEKLAPKI 610
EKLQ + + QE+Q+L KK+SS V E +++ ++
Sbjct: 153 EKLQKEISSLSQENQELKKKISS-VLENSDRAESEV 187
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Frame = +2
Query: 743 PXXPXRAVPSVCHXTXRXXXPPPXXXPPRLPG-VFSXPPXXXXPXPXXXXXXXPP 904
P P P + PPP PP LP + PP P P PP
Sbjct: 565 PPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPP 619
>02_02_0210 + 7873962-7874753
Length = 263
Score = 29.1 bits (62), Expect = 5.3
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -2
Query: 243 WNSLVWCSMSLKKSGASRRTIAXLGQSDAG-EENYELGGHDVLXERLSAEEMRTGTANXR 67
WN+ + C SGA+ R G+ DAG EE+ E G A + G A R
Sbjct: 45 WNTPLRCWRRWWCSGATSRRGGMGGRKDAGDEEDGEAGAATAFRRNRGAAGVEGGVAEPR 104
Query: 66 RSVSKS 49
V+ S
Sbjct: 105 EVVATS 110
>02_02_0209 + 7866348-7867139
Length = 263
Score = 29.1 bits (62), Expect = 5.3
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -2
Query: 243 WNSLVWCSMSLKKSGASRRTIAXLGQSDAG-EENYELGGHDVLXERLSAEEMRTGTANXR 67
WN+ + C SGA+ R G+ DAG EE+ E G A + G A R
Sbjct: 45 WNTPLRCWRRWWCSGATSRRGGMGGRKDAGDEEDGEAGAATAFRRNRGAAGVEGGVAEPR 104
Query: 66 RSVSKS 49
V+ S
Sbjct: 105 EVVATS 110
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 803 PPPXXXPPRLPGVFSXPPXXXXPXPXXXXXXXPP 904
PPP PP V S PP P P PP
Sbjct: 1162 PPPIKSPPPPAPVISPPPPVKSPPPPAPVILPPP 1195
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 803 PPPXXXPPRLPGVFSXPPXXXXPXPXXXXXXXPP 904
PPP PP V S PP P P PP
Sbjct: 1194 PPPVKSPPPPAPVISPPPPVKSPPPPAPVILPPP 1227
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 803 PPPXXXPPRLPGVFSXPPXXXXPXPXXXXXXXPP 904
PPP PP V S PP P P PP
Sbjct: 1226 PPPVKSPPPPAPVISPPPPEKSPPPAAPVILSPP 1259
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +2
Query: 803 PPPXXXPPRLPGVFSXPPXXXXPXPXXXXXXXPPLXTL 916
PPP P LP +FS PP P P P L L
Sbjct: 271 PPPAFPFPHLPPIFS-PPSPPPPPPPAFPFPFPQLPPL 307
>01_05_0046 + 17544692-17544904,17545185-17545661,17545826-17546041
Length = 301
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 188 APSLPWARAMQAKRTTNLAAMMYCXRD*VRRRC 90
APS PW ++ + T + R VRRRC
Sbjct: 172 APSSPWTHMLRVRSTATRVILGMTARKPVRRRC 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,753,049
Number of Sequences: 37544
Number of extensions: 265600
Number of successful extensions: 1142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -