Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A01
         (934 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-9|AAL11490.1|  447|Caenorhabditis elegans Hypothetical ...    31   0.89 
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    31   1.6  
AF038606-4|AAB92026.1|  331|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF038606-3|AAX55701.1|  393|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF038606-2|AAX55700.1|  404|Caenorhabditis elegans Hypothetical ...    30   2.1  
AB182367-3|BAD23998.1|  331|Caenorhabditis elegans hypothetical ...    30   2.1  
AB182367-2|BAD23997.1|  393|Caenorhabditis elegans hypothetical ...    30   2.1  
AB182367-1|BAD23996.1|  404|Caenorhabditis elegans hypothetical ...    30   2.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   2.7  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   6.3  
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p...    28   8.3  

>AC006834-9|AAL11490.1|  447|Caenorhabditis elegans Hypothetical
           protein ZK973.11 protein.
          Length = 447

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 233 KEFHKTLEQQFNSLTKSKDAQD-FSKAWKDGSESVLQ 340
           +EFHKT E+    L K  D  + F  AW DGS+   Q
Sbjct: 266 REFHKTAEEASKELRKHPDLWNRFQFAWLDGSDLASQ 302


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 194 DAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQ 295
           D  +F KDI+   K+ HKTLE   + + K +D Q
Sbjct: 594 DGENFVKDIQKTYKKSHKTLESDSSPVLKLEDPQ 627


>AF038606-4|AAB92026.1|  331|Caenorhabditis elegans Hypothetical
           protein C04C3.5a protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 479 RRTPPXSXEK-LQAAVQNTVQESQKLXKK---VSSNVXETNEKLAPK 607
           R  P    EK LQA VQN  QE+++L  K   V+S+  E +EK+  K
Sbjct: 99  RAVPLAEAEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 145


>AF038606-3|AAX55701.1|  393|Caenorhabditis elegans Hypothetical
           protein C04C3.5c protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 479 RRTPPXSXEK-LQAAVQNTVQESQKLXKK---VSSNVXETNEKLAPK 607
           R  P    EK LQA VQN  QE+++L  K   V+S+  E +EK+  K
Sbjct: 161 RAVPLAEAEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 207


>AF038606-2|AAX55700.1|  404|Caenorhabditis elegans Hypothetical
           protein C04C3.5b protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 479 RRTPPXSXEK-LQAAVQNTVQESQKLXKK---VSSNVXETNEKLAPK 607
           R  P    EK LQA VQN  QE+++L  K   V+S+  E +EK+  K
Sbjct: 172 RAVPLAEAEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 218


>AB182367-3|BAD23998.1|  331|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 479 RRTPPXSXEK-LQAAVQNTVQESQKLXKK---VSSNVXETNEKLAPK 607
           R  P    EK LQA VQN  QE+++L  K   V+S+  E +EK+  K
Sbjct: 99  RAVPLAEAEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 145


>AB182367-2|BAD23997.1|  393|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 479 RRTPPXSXEK-LQAAVQNTVQESQKLXKK---VSSNVXETNEKLAPK 607
           R  P    EK LQA VQN  QE+++L  K   V+S+  E +EK+  K
Sbjct: 161 RAVPLAEAEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 207


>AB182367-1|BAD23996.1|  404|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 479 RRTPPXSXEK-LQAAVQNTVQESQKLXKK---VSSNVXETNEKLAPK 607
           R  P    EK LQA VQN  QE+++L  K   V+S+  E +EK+  K
Sbjct: 172 RAVPLAEAEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 218


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 803 PPPXXXPPRLPGVFSXPPXXXXPXPXXXXXXXPP 904
           PPP   P   PG++  PP    P P       PP
Sbjct: 350 PPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPP 383


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 803 PPPXXXPPRLPGVFSXPPXXXXPXPXXXXXXXPP 904
           PPP   P   PG++  PP    P P       PP
Sbjct: 360 PPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPP 393


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +2

Query: 767 PSVCHXTXRXXXPPPXXXPPRLPGVFSXPPXXXXPXP 877
           PSV     R   PPP   PPR   V   PP    P P
Sbjct: 130 PSVPLLHDRYFVPPPPPVPPRHSRVQQSPPVPIHPTP 166


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +2

Query: 767 PSVCHXTXRXXXPPPXXXPPRLPGVFSXPPXXXXPXP 877
           PSV     R   PPP   PPR   V   PP    P P
Sbjct: 130 PSVPLLHDRYFVPPPPPVPPRHSRVQQSPPVPIHPTP 166


>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
           protein R05D3.1 protein.
          Length = 1053

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 194 DAPDFFKDIEHHTKEFH--KTLEQQFNSLTKSKDAQDFSKAWKDGSES 331
           +A ++F D++HHT  F    T +     +   +D  D  K W   SE+
Sbjct: 525 EAREYFSDLDHHTVNFKYTGTTDDDAIRMAFDRDKSDERKEWIRRSEN 572


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,682,206
Number of Sequences: 27780
Number of extensions: 187802
Number of successful extensions: 786
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)