Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_H10
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    26   3.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   5.2  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   5.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   5.2  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    25   6.9  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   9.1  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 324 ENNYWVIYMSNNEIDIF 374
           EN YW++  +N++ DIF
Sbjct: 385 ENGYWLVVTTNDDSDIF 401


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 130 IKNYTIYISDSQPMCRGTFVC 68
           I   T Y+S  + +C GTF C
Sbjct: 907 IDEMTAYLSKKESLCSGTFSC 927


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 53  LQNLAAHKSSAAHWLRITDVD 115
           +Q + +HK+    W  +TDVD
Sbjct: 359 VQKIVSHKNQRKRWFDLTDVD 379


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 315 HANENNYWVIYMSNNEIDIFEISALKYPFSYPS 413
           +A+   YW  Y++N    + +I+   +P+  PS
Sbjct: 156 YASFMRYWKYYITNVSSIVLQITNATFPYKMPS 188


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -1

Query: 254 FDNTYLN*LITLTYKSTKLVDMCHIYSV*LVTSTYKKLMTLHKKLHDLHQ*FSTNVPRNF 75
           F+N   + +  +TY +TKLVD   I SV L  +    L  L  KL ++ + F + +P N 
Sbjct: 101 FENASTSPVSDVTYVNTKLVDF--ISSVLLEENQGLALHQLTLKLINIGESFHSLLPINL 158

Query: 74  CVPP 63
              P
Sbjct: 159 PYEP 162


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 211 KVQNWWICATSIV 173
           +V NWW C T++V
Sbjct: 79  RVPNWWPCKTTVV 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,413
Number of Sequences: 5004
Number of extensions: 34435
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)