Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_H01
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    31   0.042
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    26   1.6  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   3.7  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    24   6.4  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    23   8.5  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    23   8.5  

>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 31.1 bits (67), Expect = 0.042
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 145 VLHLWDLEVDRRVRLLQPHVQLAEALFVNENXXXXXXXPEI 267
           V+++WD+E  + VR L+ H +   AL  N+N        E+
Sbjct: 189 VIYIWDIESTKSVRSLKGHSERVAALAWNDNTLTSGGKDEV 229


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 145 VLHLWDLEVDRRVRLLQPH 201
           ++HLWD+   RR++ ++ H
Sbjct: 528 LIHLWDIGTGRRIKTMRGH 546


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 32  IVLIEIYVISNNNFLNKIAWIFLFLIFFV 118
           +++I  Y+  N      IA++FL LIFF+
Sbjct: 262 VLIISAYIALNAVASVVIAFVFLSLIFFI 290


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 224 SSTKIYYNYYCSQKSQHRCW 283
           S T + Y  YCS+ S   CW
Sbjct: 234 SITNLAYCGYCSKPSMGACW 253


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +1

Query: 148 LHLWDLEVDRRVRLLQPHVQLAEALFVNENXXXXXXXP 261
           + +W+LE    ++ L  H  L   +  N+N       P
Sbjct: 641 IRIWNLESGELLQTLHGHSNLVSQVTFNQNILVSASAP 678


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 32  IVLIEIYVISNNNFLNKIAWIFLFLIFFV 118
           ++L+ IYV  N   +N++  + LF+++ V
Sbjct: 701 LLLLLIYVPLNRFRVNRVLGLLLFILYIV 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,110,096
Number of Sequences: 5004
Number of extensions: 18288
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)