Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_H01
         (317 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25085-1|AAA19706.1|   96|Homo sapiens Sec61-complex beta-subuni...    31   0.98 
CR542159-1|CAG46956.1|   96|Homo sapiens SEC61B protein.               31   0.98 
CR456883-1|CAG33164.1|   96|Homo sapiens SEC61B protein.               31   0.98 
BC001734-1|AAH01734.1|   96|Homo sapiens Sec61 beta subunit prot...    31   0.98 
AL137067-2|CAC08000.1|   96|Homo sapiens Sec61 beta subunit prot...    31   0.98 
BC024267-1|AAH24267.1|  594|Homo sapiens TRAF7 protein protein.        28   5.2  
AY569455-1|AAS68363.1|  670|Homo sapiens TRAF7 protein.                28   5.2  
DQ100733-1|AAZ08740.1|  129|Homo sapiens immunoglobulin heavy ch...    27   9.1  
AK223384-1|BAD97104.1|   96|Homo sapiens protein translocation c...    27   9.1  

>L25085-1|AAA19706.1|   96|Homo sapiens Sec61-complex beta-subunit
           protein.
          Length = 96

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 282 GSGGMWRFYTDD 317
           G+GGMWRFYT+D
Sbjct: 51  GTGGMWRFYTED 62


>CR542159-1|CAG46956.1|   96|Homo sapiens SEC61B protein.
          Length = 96

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 282 GSGGMWRFYTDD 317
           G+GGMWRFYT+D
Sbjct: 51  GTGGMWRFYTED 62


>CR456883-1|CAG33164.1|   96|Homo sapiens SEC61B protein.
          Length = 96

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 282 GSGGMWRFYTDD 317
           G+GGMWRFYT+D
Sbjct: 51  GTGGMWRFYTED 62


>BC001734-1|AAH01734.1|   96|Homo sapiens Sec61 beta subunit
           protein.
          Length = 96

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 282 GSGGMWRFYTDD 317
           G+GGMWRFYT+D
Sbjct: 51  GTGGMWRFYTED 62


>AL137067-2|CAC08000.1|   96|Homo sapiens Sec61 beta subunit
           protein.
          Length = 96

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 282 GSGGMWRFYTDD 317
           G+GGMWRFYT+D
Sbjct: 51  GTGGMWRFYTED 62


>BC024267-1|AAH24267.1|  594|Homo sapiens TRAF7 protein protein.
          Length = 594

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 VLHLWDLEVDRRVRLLQPHVQLAEALFV 228
           ++H+WD+E   +VR L  HV    AL V
Sbjct: 504 LIHVWDIESKEQVRTLTGHVGTVYALAV 531


>AY569455-1|AAS68363.1|  670|Homo sapiens TRAF7 protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 VLHLWDLEVDRRVRLLQPHVQLAEALFV 228
           ++H+WD+E   +VR L  HV    AL V
Sbjct: 580 LIHVWDIESKEQVRTLTGHVGTVYALAV 607


>DQ100733-1|AAZ08740.1|  129|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 129

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 218 HCSSTKIYYNYY 253
           HCSST  YY+YY
Sbjct: 101 HCSSTSCYYDYY 112


>AK223384-1|BAD97104.1|   96|Homo sapiens protein translocation
           complex beta variant protein.
          Length = 96

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 282 GSGGMWRFYTDD 317
           G+G MWRFYT+D
Sbjct: 51  GTGRMWRFYTED 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,362,952
Number of Sequences: 237096
Number of extensions: 565723
Number of successful extensions: 791
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)