Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_H01
         (317 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    27   2.9  
AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical ...    27   2.9  
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction...    26   5.1  
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction...    26   5.1  

>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +1

Query: 154 LWDLEVDRRVRLLQPHVQLAEAL 222
           +W++E+D+RV  L+P+V+ A  +
Sbjct: 76  VWNIEIDQRVFFLRPNVENARKI 98


>AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.9 protein.
          Length = 81

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +3

Query: 285 SGGMWRFYTDD 317
           +GG+WRFYT+D
Sbjct: 35  NGGLWRFYTED 45


>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
            molecule protein1, isoform d protein.
          Length = 1439

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 227  STKIYYNYYCSQKSQHRCW 283
            S K  Y YYCS++ +H  W
Sbjct: 1258 SCKHCYTYYCSRECRHNNW 1276


>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
            molecule protein1, isoform a protein.
          Length = 1480

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 227  STKIYYNYYCSQKSQHRCW 283
            S K  Y YYCS++ +H  W
Sbjct: 1299 SCKHCYTYYCSRECRHNNW 1317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,171,819
Number of Sequences: 27780
Number of extensions: 101917
Number of successful extensions: 210
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)