Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_G12
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   178   4e-46
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   177   1e-45
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    25   5.8  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   7.6  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   7.6  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  178 bits (434), Expect = 4e-46
 Identities = 100/176 (56%), Positives = 113/176 (64%), Gaps = 3/176 (1%)
 Frame = +1

Query: 40  TTDKASAHWWVDQK*---SSPHQC*CSHVV*CQLEAYDPSYKVISNASCTTNCLAPLAKV 210
           T + ASAH     K    S+P +     VV   LE ++PS KVISNASCTTNCLAPLAKV
Sbjct: 104 TKETASAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKV 163

Query: 211 IHDNFEIIEGLMXXXXXXXXXXXXXDGPSGRLWRDGRGAQQNIVPASTGAAKAVGKVIPQ 390
           I+D F I EGLM             DGPS + WR GRGA  NI+P+STGAAKAVGKVIP 
Sbjct: 164 INDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPA 223

Query: 391 LNGKLTGMAFRVPVAXVSVVDLTVRLGKPASYEAI*TERLRSR*RSFEGHPGYTED 558
           LNGKLTGMAFRVP   VSVVDLTV+L KP +YE I      +     +G  GYTED
Sbjct: 224 LNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTED 279



 Score = 31.1 bits (67), Expect = 0.12
 Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +3

Query: 3   GAEYVVESTGV-SHH**SFCSLVGGPK-VIISAPVLMLPCCIV 125
           GAEYV+ESTGV +    +   L GG K VIISAP    P  +V
Sbjct: 91  GAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSKDAPMFVV 133


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  177 bits (430), Expect = 1e-45
 Identities = 99/176 (56%), Positives = 113/176 (64%), Gaps = 3/176 (1%)
 Frame = +1

Query: 40  TTDKASAHWWVDQK*---SSPHQC*CSHVV*CQLEAYDPSYKVISNASCTTNCLAPLAKV 210
           T + ASAH     K    S+P +    +VV    E ++PS KVISNASCTTNCLAPLAKV
Sbjct: 104 TQETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKV 163

Query: 211 IHDNFEIIEGLMXXXXXXXXXXXXXDGPSGRLWRDGRGAQQNIVPASTGAAKAVGKVIPQ 390
           I+D F I EGLM             DGPS + WR GRGA  NI+P+STGAAKAVGKVIP 
Sbjct: 164 INDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPA 223

Query: 391 LNGKLTGMAFRVPVAXVSVVDLTVRLGKPASYEAI*TERLRSR*RSFEGHPGYTED 558
           LNGKLTGMAFRVP   VSVVDLTV+L KP +YE I      +     +G  GYTED
Sbjct: 224 LNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTED 279



 Score = 30.3 bits (65), Expect = 0.20
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +3

Query: 3   GAEYVVESTGV-SHH**SFCSLVGGPK-VIISAPVLMLPCCIV 125
           GA+YV+ESTGV +    +   L GG K VIISAP    P  +V
Sbjct: 91  GADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVV 133


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +3

Query: 270 HPEDC*WTFWKTVARW 317
           +P+D  W +W++++ W
Sbjct: 91  NPKDVFWVYWRSISEW 106


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 318 PWGSAKHCSCFH 353
           PW   +HCSC H
Sbjct: 222 PWKHEEHCSCHH 233



 Score = 25.0 bits (52), Expect = 7.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 318 PWGSAKHCSCFH 353
           PW   +HCSC H
Sbjct: 251 PWKHEEHCSCHH 262



 Score = 25.0 bits (52), Expect = 7.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 318 PWGSAKHCSCFH 353
           PW   +HCSC H
Sbjct: 334 PWKHEEHCSCHH 345


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 74  TKSNHLRTSADAPMLYSVNWKPTILPTK 157
           TK +H +  ADA M   ++++ T+ PT+
Sbjct: 155 TKRHHFKQYADATMNGGLSFQSTVYPTQ 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,966
Number of Sequences: 5004
Number of extensions: 40503
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)