Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_G09
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979... 103 7e-23
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254... 97 1e-20
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 29 3.3
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 28 4.3
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445... 28 5.7
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136... 28 5.7
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 27 7.5
08_01_0680 - 5958066-5960253,5960707-5961503 27 10.0
>02_04_0659 -
24797477-24797533,24797614-24797726,24797814-24797943,
24798727-24798828,24798951-24798953
Length = 134
Score = 103 bits (248), Expect = 7e-23
Identities = 55/135 (40%), Positives = 78/135 (57%)
Frame = +3
Query: 12 MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 191
MPF R+VE GRVALV+ G G+LV +VD++DQ RAL+D P + R QI +L LT
Sbjct: 1 MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58
Query: 192 RLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRN 371
++ + KA +A + KW S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 59 KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118
Query: 372 RARTAVFKSLKVKAA 416
A LK AA
Sbjct: 119 GAIRQELAKLKKTAA 133
>04_04_0506 -
25723809-25724299,25725082-25725237,25725316-25725445,
25726484-25726585,25726630-25726671
Length = 306
Score = 96.7 bits (230), Expect = 1e-20
Identities = 48/117 (41%), Positives = 71/117 (60%)
Frame = +3
Query: 15 PFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFR 194
PF R+VE GRVALV+ G G+LV +VD++DQ RAL+D P + R QI +L LT +
Sbjct: 15 PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIK 72
Query: 195 LKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVK 365
+ + KA +A + KW S W +KL +++RA + D+DRFK+ A++K
Sbjct: 73 IDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 432 GKSKIPKSAVXKLRTXXXXXXXXXXXYFFCARKQCLMIGT 551
G +P++ V KLR FFC K CLMIG+
Sbjct: 1136 GNFVLPRADVMKLRDRLRNEEITAGS-FFCGVKNCLMIGS 1174
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 421 ARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICALFSLFANFCAHWLLAHF 263
A A+F K+ N ++A + D L ++ L S+ NFC+ LA+F
Sbjct: 124 AAASFRVKVNNMLMIAHDITLGKDFRLFFQVVLLLWLLSVIGNFCSSITLAYF 176
>12_01_0551 +
4446937-4447353,4449141-4450013,4451206-4451244,
4452339-4452581
Length = 523
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 244 VHAFLTTRVGAVKGYFRRNFVKWSWLRR 161
+H T+R+G + +FR V + WLRR
Sbjct: 351 LHCTSTSRLGIFEAWFRPLLVDFGWLRR 378
>04_03_0611 -
18011469-18012563,18012756-18012920,18013542-18013639,
18014541-18015498
Length = 771
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 445 ILLLPKTPARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICAL 311
IL L TP A FK+L + R L ++NL S++C +
Sbjct: 338 ILTLTDTP-NVAVAFKILMNVNMERITLAMEIATINLEVSIVCVM 381
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 36 PGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGS 140
P VA +DG L ++G V ID L D PG+
Sbjct: 1159 PSTVAESTDGDLDNDMLGTVKSIDWNDELNDDPGA 1193
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 27.1 bits (57), Expect = 10.0
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -2
Query: 448 GILLLPKTPARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICALFSLFANFCAHWLLA 269
G L+ + R +FT ++ L +L L SV+ LF L+A +W L
Sbjct: 930 GSLIGANSLIRHSFTCHRVSALFLLNHILAILFSKFILCISVLSLLFWLYAYLAEYWKLF 989
Query: 268 HF 263
HF
Sbjct: 990 HF 991
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,705
Number of Sequences: 37544
Number of extensions: 261596
Number of successful extensions: 737
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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