Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_G06
         (103 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0960 - 21853010-21853282,21854078-21854449,21854555-218548...    28   0.89 
11_01_0750 - 6315126-6315896,6316371-6316784                           26   4.7  

>10_08_0960 -
           21853010-21853282,21854078-21854449,21854555-21854862,
           21854946-21855102
          Length = 369

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 7   ANEKTRGHIKSPISDDTIDPNAAAA 81
           A  + RG  KSP  DD I+PNAAAA
Sbjct: 241 AAAQARGS-KSPEDDDNINPNAAAA 264


>11_01_0750 - 6315126-6315896,6316371-6316784
          Length = 394

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 4   WANEKTRGHIKSPISDDTIDPNAAAALFNVIFF 102
           W  + T+G + + +   TID N    L + ++F
Sbjct: 149 WVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYF 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,035
Number of Sequences: 37544
Number of extensions: 25892
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 14,793,348
effective HSP length: 15
effective length of database: 14,230,188
effective search space used: 256143384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)